Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) yonT-SR6/-
Location 2198911..2199128 Replicon chromosome
Accession NZ_AP024622
Organism Bacillus subtilis strain BEST3096

Toxin (Protein)


Gene name yonT Uniprot ID O31941
Locus tag K6K01_RS11270 Protein ID WP_009967515.1
Coordinates 2198952..2199128 (-) Length 59 a.a.

Antitoxin (RNA)


Gene name SR6
Locus tag -
Coordinates 2198911..2199011 (+)

Genomic Context

------K6K01_RS11285K6K01_RS11240K6K01_RS11245K6K01_RS11250K6K01_RS11255K6K01_RS11260K6K01_RS11265K6K01_RS11270K6K01_RS11275K6K01_RS11280
Location: 2198911..2199011 (101 bp)
Type: Antitoxin
Protein ID: -
Location: 2199069..2199169 (101 bp)
Type: Others
Protein ID: NuclAT_2
Location: 2199069..2199169 (101 bp)
Type: Others
Protein ID: NuclAT_2
Location: 2199069..2199169 (101 bp)
Type: Others
Protein ID: NuclAT_2
Location: 2199069..2199169 (101 bp)
Type: Others
Protein ID: NuclAT_2
Location: 2201508..2201702 (195 bp)
Type: Others
Protein ID: WP_004399291.1
Location: 2194140..2194367 (228 bp)
Type: Others
Protein ID: WP_004399298.1
Location: 2194628..2195944 (1317 bp)
Type: Others
Protein ID: WP_004399369.1
Location: 2196301..2196807 (507 bp)
Type: Others
Protein ID: WP_004399486.1
Location: 2197135..2198367 (1233 bp)
Type: Others
Protein ID: WP_004399445.1
Location: 2198449..2198637 (189 bp)
Type: Others
Protein ID: WP_004399547.1
Location: 2198682..2198933 (252 bp)
Type: Others
Protein ID: WP_010886546.1
Location: 2198952..2199128 (177 bp)
Type: Toxin
Protein ID: WP_009967515.1
Location: 2199503..2200114 (612 bp)
Type: Others
Protein ID: WP_009967516.1
Location: 2200229..2200555 (327 bp)
Type: Others
Protein ID: WP_009967517.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
K6K01_RS112402194140..2194367-228WP_004399298.1helix-turn-helix transcriptional regulator-
K6K01_RS112452194628..2195944-1317WP_004399369.1hypothetical protein-
K6K01_RS112502196301..2196807-507WP_004399486.1hypothetical protein-
K6K01_RS112552197135..2198367-1233WP_004399445.1hypothetical protein-
K6K01_RS112602198449..2198637-189WP_004399547.1hypothetical protein-
K6K01_RS112652198682..2198933-252WP_010886546.1hypothetical protein-
-2198911..2199011+101--Antitoxin
K6K01_RS112702198952..2199128-177WP_009967515.1hypothetical proteinToxin
-2199069..2199169+101NuclAT_2--
-2199069..2199169+101NuclAT_2--
-2199069..2199169+101NuclAT_2--
-2199069..2199169+101NuclAT_2--
K6K01_RS112752199503..2200114-612WP_009967516.1lipoprotein-
K6K01_RS112802200229..2200555-327WP_009967517.1helix-turn-helix transcriptional regulator-
K6K01_RS112852201508..2201702+195WP_004399291.1hypothetical protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
insideProphage--2130796..2265576134780


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Type I toxin-antitoxin system, toxin Ldr

(1-35)


Sequences

Toxin        


Download         Length: 59 a.a.        Molecular weight: 6882.45 Da        Isoelectric Point: 12.8833

>T38992 WP_009967515.1 NZ_AP024622:c2199128-2198952 [Bacillus subtilis]
VLEKMGIVVAFLISLTVLTINSLTIVEKVRNLKNGTSKKKKRIRKRLRPKRQRQRIRR

Download         Length: 177 bp

>T38992 NZ_AP024622:c2199128-2198952 [Bacillus subtilis]
GTGCTTGAGAAAATGGGTATCGTAGTTGCTTTCCTCATATCTTTAACGGTTCTTACAATCAACAGTCTAACAATAGTTGA
GAAGGTAAGAAACCTAAAGAATGGGACAAGCAAAAAGAAAAAGCGTATACGCAAGCGGCTCCGACCAAAGAGACAACGCC
AACGTATACGCCGATGA

Antitoxin


Download         Length: 101 bp

>AT38992 NZ_AP024622:2198911-2199011 [Bacillus subtilis]
TAGGAACTAAAGGAGAAGTTCATTCCCCTTTAGCTTAGCTCTCATCGGCGTATACGTTGGCGTTGTCTCTTTGGTCGGAG
CCGCTTGCGTATACGCTTTTT

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
AlphaFold DBO31941

Antitoxin

Download structure file

References