Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | phd-doc/Doc(toxin) |
Location | 688978..689549 | Replicon | chromosome |
Accession | NZ_AP024552 | ||
Organism | Vibrio cholerae strain IDH-02387 |
Toxin (Protein)
Gene name | doc | Uniprot ID | Q9KMA2 |
Locus tag | K6J81_RS17225 | Protein ID | WP_000351248.1 |
Coordinates | 688978..689379 (-) | Length | 134 a.a. |
Antitoxin (Protein)
Gene name | phd | Uniprot ID | Q8GNG3 |
Locus tag | K6J81_RS19255 | Protein ID | WP_001080654.1 |
Coordinates | 689379..689549 (-) | Length | 57 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
K6J81_RS17180 | 684274..684561 | - | 288 | WP_000426470.1 | hypothetical protein | - |
K6J81_RS17185 | 684713..685381 | - | 669 | WP_000043871.1 | hypothetical protein | - |
K6J81_RS19235 | 685398..685460 | - | 63 | Protein_597 | acetyltransferase | - |
K6J81_RS17190 | 685612..685884 | + | 273 | WP_000246253.1 | DUF1778 domain-containing protein | - |
K6J81_RS17195 | 685881..686376 | + | 496 | Protein_599 | GNAT family N-acetyltransferase | - |
K6J81_RS19240 | 686393..686461 | - | 69 | Protein_600 | acetyltransferase | - |
K6J81_RS17200 | 686578..686682 | - | 105 | WP_228840819.1 | DUF645 family protein | - |
K6J81_RS19245 | 686873..686995 | - | 123 | Protein_602 | acetyltransferase | - |
K6J81_RS17205 | 687052..687507 | - | 456 | WP_001245327.1 | GNAT family N-acetyltransferase | - |
K6J81_RS17210 | 687635..687922 | - | 288 | WP_000221354.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
K6J81_RS17215 | 687912..688163 | - | 252 | WP_001250179.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
K6J81_RS17220 | 688377..688790 | - | 414 | WP_000049417.1 | VOC family protein | - |
K6J81_RS19250 | 688865..688975 | - | 111 | WP_082798255.1 | DUF3265 domain-containing protein | - |
K6J81_RS17225 | 688978..689379 | - | 402 | WP_000351248.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin |
K6J81_RS19255 | 689379..689549 | - | 171 | WP_001080654.1 | hypothetical protein | Antitoxin |
K6J81_RS19260 | 689673..690071 | - | 399 | Protein_610 | GNAT family N-acetyltransferase | - |
K6J81_RS17235 | 690208..690514 | - | 307 | Protein_611 | CatB-related O-acetyltransferase | - |
K6J81_RS17240 | 690582..691562 | + | 981 | WP_000019370.1 | IS5-like element ISVch5 family transposase | - |
K6J81_RS17245 | 691687..691842 | - | 156 | WP_000751734.1 | hypothetical protein | - |
K6J81_RS17250 | 692010..692444 | - | 435 | WP_000256036.1 | GNAT family N-acetyltransferase | - |
K6J81_RS17255 | 692581..692895 | - | 315 | WP_000071008.1 | DNA-binding transcriptional regulator | - |
K6J81_RS17260 | 692882..693214 | - | 333 | WP_000843587.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
K6J81_RS17265 | 693555..693782 | - | 228 | WP_001894457.1 | DUF1289 domain-containing protein | - |
K6J81_RS17270 | 693731..693844 | - | 114 | WP_001889158.1 | hypothetical protein | - |
K6J81_RS17275 | 694010..694231 | - | 222 | WP_032468461.1 | DUF1289 domain-containing protein | - |
K6J81_RS17280 | 694240..694354 | - | 115 | Protein_620 | acetyltransferase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Prophage | - | - | 665280..687507 | 22227 | |
- | inside | Integron | - | - | 672778..725906 | 53128 | |
flank | IS/Tn | - | - | 690582..691562 | 980 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 134 a.a. Molecular weight: 14608.71 Da Isoelectric Point: 4.0128
>T38655 WP_000351248.1 NZ_AP024552:c689379-688978 [Vibrio cholerae]
MDIICFPFERVIEINAFILKTEPGMKGAVDIPKLQGALGRIDNAIVYEGLDDVFEIAAKYTACIAVSHALPDANKRTGLA
VALEYLSLNDFELTQENDLLADAVRDLVIGIINETDFADILYAQYAKEQNSAL
MDIICFPFERVIEINAFILKTEPGMKGAVDIPKLQGALGRIDNAIVYEGLDDVFEIAAKYTACIAVSHALPDANKRTGLA
VALEYLSLNDFELTQENDLLADAVRDLVIGIINETDFADILYAQYAKEQNSAL
Download Length: 402 bp
>T38655 NZ_AP024552:c689379-688978 [Vibrio cholerae]
ATGGATATCATCTGTTTTCCTTTTGAACGAGTGATCGAGATTAATGCTTTCATCCTAAAAACAGAACCAGGAATGAAAGG
AGCCGTTGATATTCCCAAGCTTCAGGGGGCATTAGGTCGAATCGATAATGCCATCGTTTATGAAGGACTGGATGATGTTT
TTGAAATCGCTGCTAAATACACTGCTTGTATAGCGGTTTCACATGCGCTACCTGATGCGAACAAACGCACAGGTTTGGCT
GTGGCACTTGAATATTTATCACTTAACGATTTTGAGCTTACGCAGGAAAACGATTTACTTGCGGATGCAGTTCGAGATCT
TGTTATCGGCATTATCAACGAAACAGATTTTGCCGACATTCTCTACGCACAATACGCAAAAGAACAAAATTCAGCTCTCT
AA
ATGGATATCATCTGTTTTCCTTTTGAACGAGTGATCGAGATTAATGCTTTCATCCTAAAAACAGAACCAGGAATGAAAGG
AGCCGTTGATATTCCCAAGCTTCAGGGGGCATTAGGTCGAATCGATAATGCCATCGTTTATGAAGGACTGGATGATGTTT
TTGAAATCGCTGCTAAATACACTGCTTGTATAGCGGTTTCACATGCGCTACCTGATGCGAACAAACGCACAGGTTTGGCT
GTGGCACTTGAATATTTATCACTTAACGATTTTGAGCTTACGCAGGAAAACGATTTACTTGCGGATGCAGTTCGAGATCT
TGTTATCGGCATTATCAACGAAACAGATTTTGCCGACATTCTCTACGCACAATACGCAAAAGAACAAAATTCAGCTCTCT
AA
Antitoxin
Download Length: 57 a.a. Molecular weight: 6287.35 Da Isoelectric Point: 10.7274
>AT38655 WP_001080654.1 NZ_AP024552:c689549-689379 [Vibrio cholerae]
MNRKVEAYGVDAVERPKIKASKKLDLTGDAGRQIVKSETKLALRTHQKTFTKLADM
MNRKVEAYGVDAVERPKIKASKKLDLTGDAGRQIVKSETKLALRTHQKTFTKLADM
Download Length: 171 bp
>AT38655 NZ_AP024552:c689549-689379 [Vibrio cholerae]
ATGAATCGAAAAGTTGAAGCTTACGGCGTTGATGCTGTTGAAAGACCGAAAATTAAGGCTAGTAAAAAGCTTGATTTGAC
TGGTGATGCTGGTCGTCAAATTGTGAAGTCTGAAACTAAACTTGCTTTGCGTACTCATCAGAAGACATTCACTAAATTGG
CTGATATGTAA
ATGAATCGAAAAGTTGAAGCTTACGGCGTTGATGCTGTTGAAAGACCGAAAATTAAGGCTAGTAAAAAGCTTGATTTGAC
TGGTGATGCTGGTCGTCAAATTGTGAAGTCTGAAACTAAACTTGCTTTGCGTACTCATCAGAAGACATTCACTAAATTGG
CTGATATGTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0Q0PN34 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A1T4SJJ1 |