Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/ParE-Phd |
Location | 681991..682538 | Replicon | chromosome |
Accession | NZ_AP024552 | ||
Organism | Vibrio cholerae strain IDH-02387 |
Toxin (Protein)
Gene name | relE | Uniprot ID | Q9KM92 |
Locus tag | K6J81_RS17155 | Protein ID | WP_000229317.1 |
Coordinates | 681991..682293 (-) | Length | 101 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | Q9KM93 |
Locus tag | K6J81_RS17160 | Protein ID | WP_000861987.1 |
Coordinates | 682281..682538 (-) | Length | 86 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
K6J81_RS17115 | 677190..677258 | - | 69 | Protein_581 | acetyltransferase | - |
K6J81_RS17120 | 677315..677914 | - | 600 | WP_001891245.1 | glutathione S-transferase N-terminal domain-containing protein | - |
K6J81_RS17125 | 678064..678936 | - | 873 | WP_000254716.1 | DUF3800 domain-containing protein | - |
K6J81_RS17130 | 679111..679332 | - | 222 | Protein_584 | GNAT family N-acetyltransferase | - |
K6J81_RS17135 | 679393..679830 | - | 438 | WP_000503169.1 | IS200/IS605-like element IS1004 family transposase | - |
K6J81_RS17140 | 679949..680158 | - | 210 | Protein_586 | GNAT family N-acetyltransferase | - |
K6J81_RS17145 | 680294..680683 | - | 390 | WP_001081302.1 | hypothetical protein | - |
K6J81_RS17150 | 680840..681757 | - | 918 | WP_000186333.1 | alpha/beta hydrolase | - |
K6J81_RS17155 | 681991..682293 | - | 303 | WP_000229317.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
K6J81_RS17160 | 682281..682538 | - | 258 | WP_000861987.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
K6J81_RS19225 | 682620..682730 | - | 111 | WP_086010065.1 | DUF3265 domain-containing protein | - |
K6J81_RS17165 | 682740..683273 | - | 534 | WP_000118351.1 | GNAT family N-acetyltransferase | - |
K6J81_RS19230 | 683270..683539 | - | 270 | WP_000179600.1 | DUF1778 domain-containing protein | - |
K6J81_RS17175 | 683762..684133 | - | 372 | WP_001164080.1 | MazG nucleotide pyrophosphohydrolase domain-containing protein | - |
K6J81_RS17180 | 684274..684561 | - | 288 | WP_000426470.1 | hypothetical protein | - |
K6J81_RS17185 | 684713..685381 | - | 669 | WP_000043871.1 | hypothetical protein | - |
K6J81_RS19235 | 685398..685460 | - | 63 | Protein_597 | acetyltransferase | - |
K6J81_RS17190 | 685612..685884 | + | 273 | WP_000246253.1 | DUF1778 domain-containing protein | - |
K6J81_RS17195 | 685881..686376 | + | 496 | Protein_599 | GNAT family N-acetyltransferase | - |
K6J81_RS19240 | 686393..686461 | - | 69 | Protein_600 | acetyltransferase | - |
K6J81_RS17200 | 686578..686682 | - | 105 | WP_228840819.1 | DUF645 family protein | - |
K6J81_RS19245 | 686873..686995 | - | 123 | Protein_602 | acetyltransferase | - |
K6J81_RS17205 | 687052..687507 | - | 456 | WP_001245327.1 | GNAT family N-acetyltransferase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Prophage | - | - | 665280..687507 | 22227 | |
- | inside | Integron | - | - | 672778..725906 | 53128 | |
flank | IS/Tn | - | - | 679393..679830 | 437 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 101 a.a. Molecular weight: 11726.68 Da Isoelectric Point: 5.1972
>T38652 WP_000229317.1 NZ_AP024552:c682293-681991 [Vibrio cholerae]
MVEIIWTELALSDLNDIAEYIALENVVAAKQLVQTVFTKVERLADFPESGRVPPELEHLNYREVVVSPCRVFYKYDDAKV
RILFVMRAERDLRRLMLTKQ
MVEIIWTELALSDLNDIAEYIALENVVAAKQLVQTVFTKVERLADFPESGRVPPELEHLNYREVVVSPCRVFYKYDDAKV
RILFVMRAERDLRRLMLTKQ
Download Length: 303 bp
>T38652 NZ_AP024552:c682293-681991 [Vibrio cholerae]
ATGGTTGAAATAATTTGGACGGAGCTGGCTCTATCCGACTTGAATGATATTGCTGAATACATCGCGCTTGAAAATGTCGT
GGCTGCTAAACAACTGGTGCAAACCGTTTTTACAAAAGTTGAACGTTTGGCCGATTTTCCAGAGTCTGGGCGCGTCCCTC
CAGAACTAGAACACCTCAATTATCGTGAAGTCGTTGTAAGTCCGTGTCGTGTTTTCTACAAGTATGATGATGCAAAGGTT
CGTATTCTTTTTGTTATGCGTGCGGAGCGAGATTTGCGTCGGTTAATGCTTACGAAACAGTAG
ATGGTTGAAATAATTTGGACGGAGCTGGCTCTATCCGACTTGAATGATATTGCTGAATACATCGCGCTTGAAAATGTCGT
GGCTGCTAAACAACTGGTGCAAACCGTTTTTACAAAAGTTGAACGTTTGGCCGATTTTCCAGAGTCTGGGCGCGTCCCTC
CAGAACTAGAACACCTCAATTATCGTGAAGTCGTTGTAAGTCCGTGTCGTGTTTTCTACAAGTATGATGATGCAAAGGTT
CGTATTCTTTTTGTTATGCGTGCGGAGCGAGATTTGCGTCGGTTAATGCTTACGAAACAGTAG
Antitoxin
Download Length: 86 a.a. Molecular weight: 9647.15 Da Isoelectric Point: 7.3178
>AT38652 WP_000861987.1 NZ_AP024552:c682538-682281 [Vibrio cholerae]
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLIDVDDYEFMQNRLAILEGIARGERALADGKVVSHQDAKDRM
SKWLK
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLIDVDDYEFMQNRLAILEGIARGERALADGKVVSHQDAKDRM
SKWLK
Download Length: 258 bp
>AT38652 NZ_AP024552:c682538-682281 [Vibrio cholerae]
ATGAAAGTAGAACTTGTGACGTCACTAAAACGTCAGGCCACTAAGATCCTTGCCGATCTTCATGATACGAAAGAGCCAGT
ATTGATAACTGAGCACGGAAAACCGTCAGCTTACCTTATTGATGTAGACGACTATGAATTTATGCAAAATCGTTTAGCGA
TCCTGGAAGGTATTGCTCGCGGAGAGCGAGCTTTAGCGGATGGTAAAGTGGTCAGCCATCAAGATGCTAAGGACAGAATG
TCAAAATGGTTGAAATAA
ATGAAAGTAGAACTTGTGACGTCACTAAAACGTCAGGCCACTAAGATCCTTGCCGATCTTCATGATACGAAAGAGCCAGT
ATTGATAACTGAGCACGGAAAACCGTCAGCTTACCTTATTGATGTAGACGACTATGAATTTATGCAAAATCGTTTAGCGA
TCCTGGAAGGTATTGCTCGCGGAGAGCGAGCTTTAGCGGATGGTAAAGTGGTCAGCCATCAAGATGCTAAGGACAGAATG
TCAAAATGGTTGAAATAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | Q9KM92 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A1T4SLM9 |