37489

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) IasE-IsrA/SymE(toxin)
Location 3682718..3683150 Replicon chromosome
Accession NZ_AP023311
Organism Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4596

Toxin (Protein)


Gene name IasE Uniprot ID E8XIW0
Locus tag K5674_RS18130 Protein ID WP_000994224.1
Coordinates 3682875..3683150 (+) Length 92 a.a.

Antitoxin (RNA)


Gene name IsrA
Locus tag -
Coordinates 3682718..3683140 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
K5674_RS18100 3678936..3679673 - 738 WP_001535430.1 pili assembly chaperone SafB -
K5674_RS18105 3679757..3680269 - 513 WP_077248260.1 pilus assembly protein -
K5674_RS18110 3681019..3681723 - 705 Protein_3561 integrase core domain-containing protein -
K5674_RS18115 3681776..3682024 + 249 WP_001738030.1 SymE family type I addiction module toxin -
K5674_RS18120 3682126..3682434 - 309 WP_010988969.1 hypothetical protein -
K5674_RS18125 3682517..3682690 - 174 WP_088131292.1 RHS repeat-associated core domain-containing protein -
- 3682718..3683140 - 423 - - Antitoxin
K5674_RS18130 3682875..3683150 + 276 WP_000994224.1 SymE family type I addiction module toxin Toxin
K5674_RS18135 3683203..3683640 - 438 WP_000943619.1 immunity 26/phosphotriesterase HocA family protein -
K5674_RS18140 3684203..3684649 - 447 WP_000935097.1 protein SciX -
K5674_RS18145 3684643..3685512 - 870 Protein_3568 polymorphic toxin type 47 domain-containing protein -
K5674_RS18150 3685576..3685839 - 264 WP_000932531.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
flank IS/Tn - - 3681019..3681300 281


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin SymE-like

(14-57)


Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 10032.36 Da        Isoelectric Point: 6.4704

>T37489 WP_000994224.1 NZ_AP023311:3682875-3683150 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-]
MNASGVSVRHINSETCMTACYSQIPSQHLKGDWQEEAGFETGHGVTVKISEGCLILIAETDEVRDLRKELYQVKKSMKHI
KAGVNNVVNGD

Download         Length: 276 bp

>T37489 NZ_AP023311:3682875-3683150 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-]
ATGAATGCCTCCGGCGTCAGCGTCCGCCATATCAACAGCGAAACCTGCATGACCGCCTGTTACTCACAAATCCCCAGCCA
GCACCTTAAGGGTGACTGGCAGGAAGAAGCGGGATTTGAGACCGGGCACGGCGTCACCGTGAAGATCTCCGAGGGGTGTT
TGATCCTGATTGCAGAGACGGACGAAGTGAGGGATCTACGGAAGGAGCTTTATCAGGTGAAAAAGTCGATGAAGCATATT
AAGGCGGGGGTAAATAATGTGGTGAACGGGGATTAA

Antitoxin


Download         Length: 423 bp

>AT37489 NZ_AP023311:c3683140-3682718 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-]
TTCACCACATTATTTACCCCCGCCTTAATATGCTTCATCGACTTTTTCACCTGATAAAGCTCCTTCCGTAGATCCCTCAC
TTCGTCCGTCTCTGCAATCAGGATCAAACACCCCTCGGAGATCTTCACGGTGACGCCGTGCCCGGTCTCAAATCCCGCTT
CTTCCTGCCAGTCACCCTTAAGGTGCTGGCTGGGGATTTGTGAGTAACAGGCGGTCATGCAGGTTTCGCTGTTGATATGG
CGGACGCTGACGCCGGAGGCATTCATATTTGCTGACTAAATAAATTCTTATTTATCCGCCGGATGCTGGCTGATTGTGGA
GCTCAGGGTGAGTGAGTATGGGCGCGACATCCTGGCACCGCGCCTCCCTCTCCCCGGCCAGCCCCGGCCGGTGATGAGCA
GCCGGCTGCCGGGGCCGTATTTT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A3V2JPW5

Antitoxin

Download structure file

References