30649

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) dhiT-phd/-
Location 440725..441129 Replicon chromosome
Accession NZ_AP014525
Organism Vibrio cholerae MS6

Toxin (Protein)


Gene name dhiT Uniprot ID A0A086SLD6
Locus tag MS6_RS15920 Protein ID WP_001114075.1
Coordinates 440860..441129 (+) Length 90 a.a.

Antitoxin (Protein)


Gene name phd Uniprot ID -
Locus tag MS6_RS20255 Protein ID WP_099607150.1
Coordinates 440725..440829 (+) Length 35 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MS6_RS15885 436226..437143 + 918 WP_000186333.1 alpha/beta hydrolase -
MS6_RS15890 437300..437689 + 390 WP_001081302.1 hypothetical protein -
MS6_RS15895 437825..438034 + 210 Protein_483 GNAT family N-acetyltransferase -
MS6_RS15900 438153..438590 + 438 WP_041051975.1 IS200/IS605 family transposase -
MS6_RS15905 438654..438872 + 219 WP_071908318.1 GNAT family N-acetyltransferase -
MS6_RS15910 439047..439919 + 873 WP_000254716.1 DUF3800 domain-containing protein -
MS6_RS15915 440069..440668 + 600 WP_001891245.1 glutathione S-transferase N-terminal domain-containing protein -
MS6_RS20255 440725..440829 + 105 WP_099607150.1 acetyltransferase Antitoxin
MS6_RS15920 440860..441129 + 270 WP_001114075.1 DUF4160 domain-containing protein Toxin
MS6_RS15925 441123..441644 + 522 WP_000921691.1 DUF2442 domain-containing protein -
MS6_RS20260 441943..442068 + 126 WP_001905700.1 DUF645 family protein -
MS6_RS15930 442319..442714 + 396 WP_001000867.1 hypothetical protein -
MS6_RS15935 442853..443131 - 279 WP_000578476.1 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family -
MS6_RS15940 443128..443412 - 285 WP_000381183.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
MS6_RS15945 443606..444121 + 516 WP_000343779.1 GNAT family N-acetyltransferase -
MS6_RS15950 444305..444718 + 414 WP_000049420.1 VOC family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island qnrVC4 - 297729..445581 147852
- inside Integron qnrVC4 - 302809..445205 142396
flank IS/Tn - - 438153..438590 437


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Protein of unknown function DUF4160

(9-74)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10310.94 Da        Isoelectric Point: 6.6303

>T30649 WP_001114075.1 NZ_AP014525:440860-441129 [Vibrio cholerae MS6]
MPEIDALLGLSFCLYFFDNKQHKLPHIHVKYGSYELIIAIETGECLEGYLPNKQRKRAENHILEHREQLMVMWNKAVNGE
NPGKLGDLC

Download         Length: 270 bp

>T30649 NZ_AP014525:440860-441129 [Vibrio cholerae MS6]
ATGCCAGAGATTGATGCCCTATTAGGTCTTTCATTTTGCTTGTACTTCTTTGATAACAAGCAGCATAAATTACCTCATAT
TCACGTTAAGTACGGTAGTTACGAGCTAATTATTGCTATTGAAACAGGTGAGTGTTTAGAGGGTTACTTACCCAATAAGC
AACGAAAACGTGCTGAAAACCATATTCTTGAACATCGAGAGCAATTGATGGTGATGTGGAATAAAGCGGTGAATGGTGAA
AATCCAGGTAAGTTAGGTGATTTATGTTGA

Antitoxin


Download         Length: 35 a.a.        Molecular weight: 3991.79 Da        Isoelectric Point: 9.2853

>AT30649 WP_099607150.1 NZ_AP014525:440725-440829 [Vibrio cholerae MS6]
VVSVVVFEFSSMRCQPLRRALYAYRNCLLKDTLL

Download         Length: 105 bp

>AT30649 NZ_AP014525:440725-440829 [Vibrio cholerae MS6]
GTGGTTTCGGTTGTTGTGTTTGAGTTTAGTAGTATGCGCTGCCAGCCCCTTAGGCGGGCGTTATATGCTTATAGGAATTG
TCTCCTAAAGGATACGCTGCTATAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A086SLD6

Antitoxin

Source ID Structure

References