Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/ParE-Phd |
Location | 435445..435992 | Replicon | chromosome |
Accession | NZ_AP014525 | ||
Organism | Vibrio cholerae MS6 |
Toxin (Protein)
Gene name | relE | Uniprot ID | Q9KM92 |
Locus tag | MS6_RS15880 | Protein ID | WP_000229317.1 |
Coordinates | 435690..435992 (+) | Length | 101 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | Q9KM93 |
Locus tag | MS6_RS15875 | Protein ID | WP_000861987.1 |
Coordinates | 435445..435702 (+) | Length | 86 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
MS6_RS15830 | 430821..431072 | + | 252 | WP_001250179.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
MS6_RS15835 | 431062..431349 | + | 288 | WP_000221354.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
MS6_RS15840 | 431477..431932 | + | 456 | WP_001245327.1 | GNAT family N-acetyltransferase | - |
MS6_RS15845 | 432254..432406 | + | 153 | WP_001884520.1 | DUF645 family protein | - |
MS6_RS15850 | 432602..433270 | + | 669 | WP_000043871.1 | hypothetical protein | - |
MS6_RS15855 | 433422..433709 | + | 288 | WP_000426470.1 | hypothetical protein | - |
MS6_RS15860 | 433850..434221 | + | 372 | WP_001164080.1 | nucleotide pyrophosphohydrolase | - |
MS6_RS20450 | 434288..434713 | + | 426 | WP_001882332.1 | DUF1778 domain-containing protein | - |
MS6_RS15870 | 434710..435243 | + | 534 | WP_000118351.1 | GNAT family N-acetyltransferase | - |
MS6_RS15875 | 435445..435702 | + | 258 | WP_000861987.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
MS6_RS15880 | 435690..435992 | + | 303 | WP_000229317.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
MS6_RS15885 | 436226..437143 | + | 918 | WP_000186333.1 | alpha/beta hydrolase | - |
MS6_RS15890 | 437300..437689 | + | 390 | WP_001081302.1 | hypothetical protein | - |
MS6_RS15895 | 437825..438034 | + | 210 | Protein_483 | GNAT family N-acetyltransferase | - |
MS6_RS15900 | 438153..438590 | + | 438 | WP_041051975.1 | IS200/IS605 family transposase | - |
MS6_RS15905 | 438654..438872 | + | 219 | WP_071908318.1 | GNAT family N-acetyltransferase | - |
MS6_RS15910 | 439047..439919 | + | 873 | WP_000254716.1 | DUF3800 domain-containing protein | - |
MS6_RS15915 | 440069..440668 | + | 600 | WP_001891245.1 | glutathione S-transferase N-terminal domain-containing protein | - |
MS6_RS20255 | 440725..440829 | + | 105 | WP_099607150.1 | acetyltransferase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Genomic island | qnrVC4 | - | 297729..445581 | 147852 | |
- | inside | Integron | qnrVC4 | - | 302809..445205 | 142396 | |
flank | IS/Tn | - | - | 438153..438590 | 437 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 101 a.a. Molecular weight: 11726.68 Da Isoelectric Point: 5.1972
>T30648 WP_000229317.1 NZ_AP014525:435690-435992 [Vibrio cholerae MS6]
MVEIIWTELALSDLNDIAEYIALENVVAAKQLVQTVFTKVERLADFPESGRVPPELEHLNYREVVVSPCRVFYKYDDAKV
RILFVMRAERDLRRLMLTKQ
MVEIIWTELALSDLNDIAEYIALENVVAAKQLVQTVFTKVERLADFPESGRVPPELEHLNYREVVVSPCRVFYKYDDAKV
RILFVMRAERDLRRLMLTKQ
Download Length: 303 bp
>T30648 NZ_AP014525:435690-435992 [Vibrio cholerae MS6]
ATGGTTGAAATAATTTGGACGGAGCTGGCTCTATCCGACTTGAATGATATTGCTGAATACATCGCGCTTGAAAATGTCGT
GGCTGCTAAACAACTGGTGCAAACCGTTTTTACAAAAGTTGAACGTTTGGCCGATTTTCCAGAGTCTGGGCGCGTCCCTC
CAGAACTAGAACACCTCAATTATCGTGAAGTCGTTGTAAGTCCGTGTCGTGTTTTCTACAAGTATGATGATGCAAAGGTT
CGTATTCTTTTTGTTATGCGTGCGGAGCGAGATTTGCGTCGGTTAATGCTTACGAAACAGTAG
ATGGTTGAAATAATTTGGACGGAGCTGGCTCTATCCGACTTGAATGATATTGCTGAATACATCGCGCTTGAAAATGTCGT
GGCTGCTAAACAACTGGTGCAAACCGTTTTTACAAAAGTTGAACGTTTGGCCGATTTTCCAGAGTCTGGGCGCGTCCCTC
CAGAACTAGAACACCTCAATTATCGTGAAGTCGTTGTAAGTCCGTGTCGTGTTTTCTACAAGTATGATGATGCAAAGGTT
CGTATTCTTTTTGTTATGCGTGCGGAGCGAGATTTGCGTCGGTTAATGCTTACGAAACAGTAG
Antitoxin
Download Length: 86 a.a. Molecular weight: 9647.15 Da Isoelectric Point: 7.3178
>AT30648 WP_000861987.1 NZ_AP014525:435445-435702 [Vibrio cholerae MS6]
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLIDVDDYEFMQNRLAILEGIARGERALADGKVVSHQDAKDRM
SKWLK
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLIDVDDYEFMQNRLAILEGIARGERALADGKVVSHQDAKDRM
SKWLK
Download Length: 258 bp
>AT30648 NZ_AP014525:435445-435702 [Vibrio cholerae MS6]
ATGAAAGTAGAACTTGTGACGTCACTAAAACGTCAGGCCACTAAGATCCTTGCCGATCTTCATGATACGAAAGAGCCAGT
ATTGATAACTGAGCACGGAAAACCGTCAGCTTACCTTATTGATGTAGACGACTATGAATTTATGCAAAATCGTTTAGCGA
TCCTGGAAGGTATTGCTCGCGGAGAGCGAGCTTTAGCGGATGGTAAAGTGGTCAGCCATCAAGATGCTAAGGACAGAATG
TCAAAATGGTTGAAATAA
ATGAAAGTAGAACTTGTGACGTCACTAAAACGTCAGGCCACTAAGATCCTTGCCGATCTTCATGATACGAAAGAGCCAGT
ATTGATAACTGAGCACGGAAAACCGTCAGCTTACCTTATTGATGTAGACGACTATGAATTTATGCAAAATCGTTTAGCGA
TCCTGGAAGGTATTGCTCGCGGAGAGCGAGCTTTAGCGGATGGTAAAGTGGTCAGCCATCAAGATGCTAAGGACAGAATG
TCAAAATGGTTGAAATAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | Q9KM92 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A1T4SLM9 |