30648

Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) relBE/ParE-Phd
Location 435445..435992 Replicon chromosome
Accession NZ_AP014525
Organism Vibrio cholerae MS6

Toxin (Protein)


Gene name relE Uniprot ID Q9KM92
Locus tag MS6_RS15880 Protein ID WP_000229317.1
Coordinates 435690..435992 (+) Length 101 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID Q9KM93
Locus tag MS6_RS15875 Protein ID WP_000861987.1
Coordinates 435445..435702 (+) Length 86 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MS6_RS15830 430821..431072 + 252 WP_001250179.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
MS6_RS15835 431062..431349 + 288 WP_000221354.1 type II toxin-antitoxin system RelE/ParE family toxin -
MS6_RS15840 431477..431932 + 456 WP_001245327.1 GNAT family N-acetyltransferase -
MS6_RS15845 432254..432406 + 153 WP_001884520.1 DUF645 family protein -
MS6_RS15850 432602..433270 + 669 WP_000043871.1 hypothetical protein -
MS6_RS15855 433422..433709 + 288 WP_000426470.1 hypothetical protein -
MS6_RS15860 433850..434221 + 372 WP_001164080.1 nucleotide pyrophosphohydrolase -
MS6_RS20450 434288..434713 + 426 WP_001882332.1 DUF1778 domain-containing protein -
MS6_RS15870 434710..435243 + 534 WP_000118351.1 GNAT family N-acetyltransferase -
MS6_RS15875 435445..435702 + 258 WP_000861987.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
MS6_RS15880 435690..435992 + 303 WP_000229317.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
MS6_RS15885 436226..437143 + 918 WP_000186333.1 alpha/beta hydrolase -
MS6_RS15890 437300..437689 + 390 WP_001081302.1 hypothetical protein -
MS6_RS15895 437825..438034 + 210 Protein_483 GNAT family N-acetyltransferase -
MS6_RS15900 438153..438590 + 438 WP_041051975.1 IS200/IS605 family transposase -
MS6_RS15905 438654..438872 + 219 WP_071908318.1 GNAT family N-acetyltransferase -
MS6_RS15910 439047..439919 + 873 WP_000254716.1 DUF3800 domain-containing protein -
MS6_RS15915 440069..440668 + 600 WP_001891245.1 glutathione S-transferase N-terminal domain-containing protein -
MS6_RS20255 440725..440829 + 105 WP_099607150.1 acetyltransferase -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island qnrVC4 - 297729..445581 147852
- inside Integron qnrVC4 - 302809..445205 142396
flank IS/Tn - - 438153..438590 437


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.



Sequences


Toxin        


Download         Length: 101 a.a.        Molecular weight: 11726.68 Da        Isoelectric Point: 5.1972

>T30648 WP_000229317.1 NZ_AP014525:435690-435992 [Vibrio cholerae MS6]
MVEIIWTELALSDLNDIAEYIALENVVAAKQLVQTVFTKVERLADFPESGRVPPELEHLNYREVVVSPCRVFYKYDDAKV
RILFVMRAERDLRRLMLTKQ

Download         Length: 303 bp

>T30648 NZ_AP014525:435690-435992 [Vibrio cholerae MS6]
ATGGTTGAAATAATTTGGACGGAGCTGGCTCTATCCGACTTGAATGATATTGCTGAATACATCGCGCTTGAAAATGTCGT
GGCTGCTAAACAACTGGTGCAAACCGTTTTTACAAAAGTTGAACGTTTGGCCGATTTTCCAGAGTCTGGGCGCGTCCCTC
CAGAACTAGAACACCTCAATTATCGTGAAGTCGTTGTAAGTCCGTGTCGTGTTTTCTACAAGTATGATGATGCAAAGGTT
CGTATTCTTTTTGTTATGCGTGCGGAGCGAGATTTGCGTCGGTTAATGCTTACGAAACAGTAG

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9647.15 Da        Isoelectric Point: 7.3178

>AT30648 WP_000861987.1 NZ_AP014525:435445-435702 [Vibrio cholerae MS6]
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLIDVDDYEFMQNRLAILEGIARGERALADGKVVSHQDAKDRM
SKWLK

Download         Length: 258 bp

>AT30648 NZ_AP014525:435445-435702 [Vibrio cholerae MS6]
ATGAAAGTAGAACTTGTGACGTCACTAAAACGTCAGGCCACTAAGATCCTTGCCGATCTTCATGATACGAAAGAGCCAGT
ATTGATAACTGAGCACGGAAAACCGTCAGCTTACCTTATTGATGTAGACGACTATGAATTTATGCAAAATCGTTTAGCGA
TCCTGGAAGGTATTGCTCGCGGAGAGCGAGCTTTAGCGGATGGTAAAGTGGTCAGCCATCAAGATGCTAAGGACAGAATG
TCAAAATGGTTGAAATAA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB Q9KM92


Antitoxin

Source ID Structure
AlphaFold DB A0A1T4SLM9

References