Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | I | Classification (family/domain) | yonT-as-bsrG/- |
Location | 2237526..2238013 | Replicon | chromosome |
Accession | NZ_LN680001 | ||
Organism | Bacillus subtilis strain BS34A |
Toxin (Protein)
Gene name | yonT | Uniprot ID | C0H439 |
Locus tag | VV28_RS21745 | Protein ID | WP_010886546.1 |
Coordinates | 2237526..2237777 (-) | Length | 84 a.a. |
Antitoxin (RNA)
Gene name | as-bsrG | ||
Locus tag | - | ||
Coordinates | 2237913..2238013 (+) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
VV28_RS10990 | 2232984..2233211 | - | 228 | WP_004399298.1 | helix-turn-helix transcriptional regulator | - |
VV28_RS10995 | 2233472..2234788 | - | 1317 | WP_004399369.1 | hypothetical protein | - |
VV28_RS11000 | 2235145..2235651 | - | 507 | WP_004399486.1 | hypothetical protein | - |
VV28_RS11005 | 2235979..2237211 | - | 1233 | WP_004399445.1 | hypothetical protein | - |
VV28_RS11010 | 2237293..2237481 | - | 189 | WP_004399547.1 | hypothetical protein | - |
VV28_RS21745 | 2237526..2237777 | - | 252 | WP_010886546.1 | hypothetical protein | Toxin |
VV28_RS21750 | 2237796..2237972 | - | 177 | WP_009967515.1 | hypothetical protein | - |
- | 2237913..2238013 | + | 101 | NuclAT_2 | - | Antitoxin |
- | 2237913..2238013 | + | 101 | NuclAT_2 | - | Antitoxin |
- | 2237913..2238013 | + | 101 | NuclAT_2 | - | Antitoxin |
- | 2237913..2238013 | + | 101 | NuclAT_2 | - | Antitoxin |
VV28_RS11015 | 2238347..2238958 | - | 612 | WP_009967516.1 | lipoprotein | - |
VV28_RS11020 | 2239073..2239399 | - | 327 | WP_009967517.1 | helix-turn-helix domain-containing protein | - |
VV28_RS11025 | 2240352..2240546 | + | 195 | WP_004399291.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
inside | Prophage | - | - | 2169640..2305065 | 135425 | ||
inside | Prophage | - | - | 2169640..2304420 | 134780 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 84 a.a. Molecular weight: 9956.96 Da Isoelectric Point: 9.7930
>T285527 WP_010886546.1 NZ_LN680001:c2237777-2237526 [Bacillus subtilis]
MNFSFSSYPYYNMIKHIANMKRFSLWFTHITFIGLFLMFQLIKDYFSSEGQALINTIFVVTCIIAILLWIIYCVFLKLRN
KSH
MNFSFSSYPYYNMIKHIANMKRFSLWFTHITFIGLFLMFQLIKDYFSSEGQALINTIFVVTCIIAILLWIIYCVFLKLRN
KSH
Download Length: 252 bp
Antitoxin
Download Length: 101 bp
>AT285527 NZ_LN680001:2237913-2238013 [Bacillus subtilis]
GATTGTAAGAACCGTTAAAGATATGAGGAAAGCAACTACGATACCCATTTTCTCAAGCACTATGTACACCTCCTTTCCTA
TGACTCTATTATAACATAATT
GATTGTAAGAACCGTTAAAGATATGAGGAAAGCAACTACGATACCCATTTTCTCAAGCACTATGTACACCTCCTTTCCTA
TGACTCTATTATAACATAATT
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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