Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 1268842..1269368 | Replicon | chromosome |
| Accession | NZ_CP122318 | ||
| Organism | Escherichia coli strain HT873X1 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | QCG45_RS06200 | Protein ID | WP_000323025.1 |
| Coordinates | 1269081..1269368 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | QCG45_RS06195 | Protein ID | WP_000534858.1 |
| Coordinates | 1268842..1269081 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QCG45_RS06135 (1263869) | 1263869..1264636 | - | 768 | Protein_1196 | exonuclease | - |
| QCG45_RS06140 (1264729) | 1264729..1264920 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| QCG45_RS06145 (1264917) | 1264917..1265105 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| QCG45_RS06150 (1265673) | 1265673..1265891 | - | 219 | WP_001171942.1 | protein YdfC | - |
| QCG45_RS06155 (1265921) | 1265921..1266049 | - | 129 | WP_000344964.1 | protein YdfB | - |
| QCG45_RS06160 (1266051) | 1266051..1266206 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| QCG45_RS06165 (1266373) | 1266373..1266780 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| QCG45_RS06170 (1266864) | 1266864..1267094 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| QCG45_RS06175 (1267078) | 1267078..1267356 | + | 279 | Protein_1204 | protein YdfX | - |
| QCG45_RS06180 (1267391) | 1267391..1267540 | + | 150 | WP_011443592.1 | protein YdfW | - |
| QCG45_RS06185 (1267977) | 1267977..1268309 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| QCG45_RS06190 (1268512) | 1268512..1268817 | - | 306 | WP_001326990.1 | protein YdfV | - |
| QCG45_RS06195 (1268842) | 1268842..1269081 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| QCG45_RS06200 (1269081) | 1269081..1269368 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| QCG45_RS06205 (1269440) | 1269440..1269595 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| QCG45_RS06210 (1269812) | 1269812..1270063 | + | 252 | WP_000980994.1 | protein Rem | - |
| QCG45_RS06215 (1270130) | 1270130..1270408 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| QCG45_RS06220 (1270410) | 1270410..1271459 | + | 1050 | WP_001393597.1 | DUF968 domain-containing protein | - |
| QCG45_RS06225 (1271473) | 1271473..1272225 | + | 753 | WP_001047135.1 | antitermination protein | - |
| QCG45_RS06230 (1272503) | 1272503..1272592 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| QCG45_RS06235 (1272647) | 1272647..1272859 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| QCG45_RS06240 (1273160) | 1273160..1273375 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| QCG45_RS06245 (1273739) | 1273739..1273909 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| QCG45_RS06250 (1274129) | 1274129..1274344 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| inside | Prophage | - | - | 1250251..1283712 | 33461 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|