Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 1235428..1235954 | Replicon | chromosome |
| Accession | NZ_CP122316 | ||
| Organism | Escherichia coli strain HT-946 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | QCG48_RS06065 | Protein ID | WP_000323025.1 |
| Coordinates | 1235667..1235954 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | QCG48_RS06060 | Protein ID | WP_000534858.1 |
| Coordinates | 1235428..1235667 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QCG48_RS06000 (1230455) | 1230455..1231222 | - | 768 | Protein_1169 | exonuclease | - |
| QCG48_RS06005 (1231315) | 1231315..1231506 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| QCG48_RS06010 (1231503) | 1231503..1231691 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| QCG48_RS06015 (1232259) | 1232259..1232477 | - | 219 | WP_001171942.1 | protein YdfC | - |
| QCG48_RS06020 (1232507) | 1232507..1232635 | - | 129 | WP_000344964.1 | protein YdfB | - |
| QCG48_RS06025 (1232637) | 1232637..1232792 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| QCG48_RS06030 (1232959) | 1232959..1233366 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| QCG48_RS06035 (1233450) | 1233450..1233680 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| QCG48_RS06040 (1233664) | 1233664..1233942 | + | 279 | Protein_1177 | protein YdfX | - |
| QCG48_RS06045 (1233977) | 1233977..1234126 | + | 150 | WP_011443592.1 | protein YdfW | - |
| QCG48_RS06050 (1234563) | 1234563..1234895 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| QCG48_RS06055 (1235098) | 1235098..1235403 | - | 306 | WP_001326990.1 | protein YdfV | - |
| QCG48_RS06060 (1235428) | 1235428..1235667 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| QCG48_RS06065 (1235667) | 1235667..1235954 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| QCG48_RS06070 (1236026) | 1236026..1236181 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| QCG48_RS06075 (1236398) | 1236398..1236649 | + | 252 | WP_000980994.1 | protein Rem | - |
| QCG48_RS06080 (1236716) | 1236716..1236994 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| QCG48_RS06085 (1236996) | 1236996..1238045 | + | 1050 | WP_001393597.1 | DUF968 domain-containing protein | - |
| QCG48_RS06090 (1238059) | 1238059..1238811 | + | 753 | WP_001047135.1 | antitermination protein | - |
| QCG48_RS06095 (1239089) | 1239089..1239178 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| QCG48_RS06100 (1239233) | 1239233..1239445 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| QCG48_RS06105 (1239746) | 1239746..1239961 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| QCG48_RS06110 (1240325) | 1240325..1240495 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| QCG48_RS06115 (1240715) | 1240715..1240930 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| inside | Prophage | - | - | 1216837..1250298 | 33461 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|