Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | I | Classification (family/domain) | IasE-IsrA/SymE(toxin) |
Location | 3736042..3736456 | Replicon | chromosome |
Accession | NZ_CP117354 | ||
Organism | Salmonella enterica subsp. enterica serovar Dublin strain RM099 |
Toxin (Protein)
Gene name | IasE | Uniprot ID | M7RBD3 |
Locus tag | PQP84_RS18600 | Protein ID | WP_000994230.1 |
Coordinates | 3736199..3736456 (+) | Length | 86 a.a. |
Antitoxin (RNA)
Gene name | IsrA | ||
Locus tag | - | ||
Coordinates | 3736042..3736374 (-) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
PQP84_RS18560 | 3731303..3731755 | - | 453 | WP_001675682.1 | Saf-pilin pilus formation protein SafA | - |
PQP84_RS18565 | 3732564..3733134 | - | 571 | Protein_3635 | integrase core domain-containing protein | - |
PQP84_RS18570 | 3733055..3733264 | - | 210 | WP_001676010.1 | hypothetical protein | - |
PQP84_RS18575 | 3733317..3733631 | + | 315 | WP_072100769.1 | SymE family type I addiction module toxin | - |
PQP84_RS18580 | 3733698..3733976 | - | 279 | WP_012543321.1 | hypothetical protein | - |
PQP84_RS18585 | 3734292..3734759 | - | 468 | WP_000828183.1 | sugar tyrosine-protein kinase | - |
PQP84_RS18590 | 3734756..3735073 | - | 318 | WP_001751277.1 | hypothetical protein | - |
PQP84_RS18595 | 3735631..3735864 | - | 234 | WP_124084119.1 | hypothetical protein | - |
- | 3736042..3736374 | - | 333 | - | - | Antitoxin |
PQP84_RS18600 | 3736199..3736456 | + | 258 | WP_000994230.1 | SymE family type I addiction module toxin | Toxin |
PQP84_RS18605 | 3736522..3736968 | - | 447 | WP_000171102.1 | hypothetical protein | - |
PQP84_RS18610 | 3736965..3739787 | - | 2823 | Protein_3644 | RHS repeat-associated core domain-containing protein | - |
PQP84_RS18615 | 3739778..3740044 | + | 267 | WP_223151220.1 | SymE family type I addiction module toxin | - |
PQP84_RS18620 | 3740162..3740500 | - | 339 | WP_000201550.1 | hypothetical protein | - |
PQP84_RS18625 | 3740522..3740842 | - | 321 | WP_016695071.1 | HNH endonuclease | - |
PQP84_RS18630 | 3740900..3741183 | - | 284 | Protein_3648 | RHS repeat-associated core domain-containing protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Genomic island | - | - | 3723408..3741736 | 18328 | |
flank | IS/Tn | - | - | 3732564..3732842 | 278 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 86 a.a. Molecular weight: 9490.94 Da Isoelectric Point: 9.5519
>T270750 WP_000994230.1 NZ_CP117354:3736199-3736456 [Salmonella enterica subsp. enterica serovar Dublin]
MNASGVSVRHINSKTHMTTYYSQIPSLHLKGDWLEEAGFKTGRGVTVKISQGCIVLMADSNEEQKLREQLYQAKQVVKGI
KDVLV
MNASGVSVRHINSKTHMTTYYSQIPSLHLKGDWLEEAGFKTGRGVTVKISQGCIVLMADSNEEQKLREQLYQAKQVVKGI
KDVLV
Download Length: 258 bp
Antitoxin
Download Length: 333 bp
>AT270750 NZ_CP117354:c3736374-3736042 [Salmonella enterica subsp. enterica serovar Dublin]
TCCGCCATCAGCACAATACACCCCTGTGAAATCTTCACGGTGACGCCGCGCCCGGTCTTAAATCCCGCTTCTTCCAGCCA
GTCGCCCTTAAGATGCAGGCTGGGGATTTGTGAGTAATAGGTGGTCATGTGGGTTTTGCTGTTGATGTGGCGGACGCTGA
CGCCGGAGGCATTCATATTTGCTGACTAAATAAATTCTTAATTATCCGCCGGATGCTGGCTGATTGTGGAGCTCAGGGTG
AGCGAGTATGGGCGCGACATCCTGGCACTGAGCCCCCCTCTCCCCGGCCAGCTCCGGGCGGTGATGAGCAACCGGCTGCC
GGGGCCGTATTTT
TCCGCCATCAGCACAATACACCCCTGTGAAATCTTCACGGTGACGCCGCGCCCGGTCTTAAATCCCGCTTCTTCCAGCCA
GTCGCCCTTAAGATGCAGGCTGGGGATTTGTGAGTAATAGGTGGTCATGTGGGTTTTGCTGTTGATGTGGCGGACGCTGA
CGCCGGAGGCATTCATATTTGCTGACTAAATAAATTCTTAATTATCCGCCGGATGCTGGCTGATTGTGGAGCTCAGGGTG
AGCGAGTATGGGCGCGACATCCTGGCACTGAGCCCCCCTCTCCCCGGCCAGCTCCGGGCGGTGATGAGCAACCGGCTGCC
GGGGCCGTATTTT
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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