Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 3470949..3471475 | Replicon | chromosome |
| Accession | NZ_CP114893 | ||
| Organism | Escherichia coli strain CM13 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | O6R07_RS16940 | Protein ID | WP_000323025.1 |
| Coordinates | 3471188..3471475 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | O6R07_RS16935 | Protein ID | WP_000534858.1 |
| Coordinates | 3470949..3471188 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O6R07_RS16875 (3465976) | 3465976..3466743 | - | 768 | Protein_3279 | exonuclease | - |
| O6R07_RS16880 (3466836) | 3466836..3467027 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| O6R07_RS16885 (3467024) | 3467024..3467212 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| O6R07_RS16890 (3467780) | 3467780..3467998 | - | 219 | WP_001171942.1 | protein YdfC | - |
| O6R07_RS16895 (3468028) | 3468028..3468156 | - | 129 | WP_000344964.1 | protein YdfB | - |
| O6R07_RS16900 (3468158) | 3468158..3468313 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| O6R07_RS16905 (3468480) | 3468480..3468887 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| O6R07_RS16910 (3468971) | 3468971..3469201 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| O6R07_RS16915 (3469185) | 3469185..3469463 | + | 279 | Protein_3287 | protein YdfX | - |
| O6R07_RS16920 (3469498) | 3469498..3469647 | + | 150 | WP_011443592.1 | protein YdfW | - |
| O6R07_RS16925 (3470084) | 3470084..3470416 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| O6R07_RS16930 (3470619) | 3470619..3470924 | - | 306 | WP_001326990.1 | protein YdfV | - |
| O6R07_RS16935 (3470949) | 3470949..3471188 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| O6R07_RS16940 (3471188) | 3471188..3471475 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| O6R07_RS16945 (3471547) | 3471547..3471702 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| O6R07_RS16950 (3471919) | 3471919..3472170 | + | 252 | WP_000980994.1 | protein Rem | - |
| O6R07_RS16955 (3472237) | 3472237..3472515 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| O6R07_RS16960 (3472517) | 3472517..3473566 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| O6R07_RS16965 (3473580) | 3473580..3474332 | + | 753 | WP_001047135.1 | antitermination protein | - |
| O6R07_RS16970 (3474610) | 3474610..3474699 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| O6R07_RS16975 (3474754) | 3474754..3474966 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| O6R07_RS16980 (3475267) | 3475267..3475482 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| O6R07_RS16985 (3475846) | 3475846..3476016 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| O6R07_RS16990 (3476236) | 3476236..3476451 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| inside | Prophage | - | - | 3451022..3485819 | 34797 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|