Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 863356..863882 | Replicon | chromosome |
| Accession | NZ_CP114892 | ||
| Organism | Escherichia coli strain CM5 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | O6Q95_RS04315 | Protein ID | WP_000323025.1 |
| Coordinates | 863356..863643 (-) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | O6Q95_RS04320 | Protein ID | WP_000534858.1 |
| Coordinates | 863643..863882 (-) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O6Q95_RS04265 (858380) | 858380..858595 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| O6Q95_RS04270 (858815) | 858815..858985 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| O6Q95_RS04275 (859349) | 859349..859564 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| O6Q95_RS04280 (859865) | 859865..860077 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| O6Q95_RS04285 (860132) | 860132..860221 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| O6Q95_RS04290 (860499) | 860499..861251 | - | 753 | WP_001047135.1 | antitermination protein | - |
| O6Q95_RS04295 (861265) | 861265..862314 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| O6Q95_RS04300 (862316) | 862316..862594 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| O6Q95_RS04305 (862661) | 862661..862912 | - | 252 | WP_000980994.1 | protein Rem | - |
| O6Q95_RS04310 (863129) | 863129..863284 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| O6Q95_RS04315 (863356) | 863356..863643 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| O6Q95_RS04320 (863643) | 863643..863882 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| O6Q95_RS04325 (863907) | 863907..864212 | + | 306 | WP_001326990.1 | protein YdfV | - |
| O6Q95_RS04330 (864415) | 864415..864747 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| O6Q95_RS04335 (865184) | 865184..865333 | - | 150 | WP_011443592.1 | protein YdfW | - |
| O6Q95_RS04340 (865368) | 865368..865646 | - | 279 | Protein_855 | protein YdfX | - |
| O6Q95_RS04345 (865630) | 865630..865860 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| O6Q95_RS04350 (865944) | 865944..866351 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| O6Q95_RS04355 (866518) | 866518..866673 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| O6Q95_RS04360 (866675) | 866675..866803 | + | 129 | WP_000344964.1 | protein YdfB | - |
| O6Q95_RS04365 (866833) | 866833..867051 | + | 219 | WP_001171942.1 | protein YdfC | - |
| O6Q95_RS04370 (867619) | 867619..867807 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| O6Q95_RS04375 (867804) | 867804..867995 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| O6Q95_RS04380 (868088) | 868088..868855 | + | 768 | Protein_863 | exonuclease | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| inside | Prophage | - | - | 849012..883809 | 34797 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|