Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 2096329..2096855 | Replicon | chromosome |
| Accession | NZ_CP111008 | ||
| Organism | Escherichia coli strain J53-p130 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | ORI87_RS10210 | Protein ID | WP_000323025.1 |
| Coordinates | 2096568..2096855 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | ORI87_RS10205 | Protein ID | WP_000534858.1 |
| Coordinates | 2096329..2096568 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ORI87_RS10145 (2091356) | 2091356..2092123 | - | 768 | Protein_1980 | exonuclease | - |
| ORI87_RS10150 (2092216) | 2092216..2092407 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| ORI87_RS10155 (2092404) | 2092404..2092592 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| ORI87_RS10160 (2093160) | 2093160..2093378 | - | 219 | WP_001171942.1 | protein YdfC | - |
| ORI87_RS10165 (2093408) | 2093408..2093536 | - | 129 | WP_000344964.1 | protein YdfB | - |
| ORI87_RS10170 (2093538) | 2093538..2093693 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| ORI87_RS10175 (2093860) | 2093860..2094267 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| ORI87_RS10180 (2094351) | 2094351..2094581 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| ORI87_RS10185 (2094565) | 2094565..2094843 | + | 279 | Protein_1988 | hypothetical protein | - |
| ORI87_RS10190 (2094878) | 2094878..2095027 | + | 150 | WP_011443592.1 | protein YdfW | - |
| ORI87_RS10195 (2095464) | 2095464..2095796 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| ORI87_RS10200 (2095999) | 2095999..2096304 | - | 306 | WP_001326990.1 | protein YdfV | - |
| ORI87_RS10205 (2096329) | 2096329..2096568 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| ORI87_RS10210 (2096568) | 2096568..2096855 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| ORI87_RS10215 (2096927) | 2096927..2097082 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| ORI87_RS10220 (2097299) | 2097299..2097550 | + | 252 | WP_000980994.1 | protein Rem | - |
| ORI87_RS10225 (2097617) | 2097617..2097895 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| ORI87_RS10230 (2097897) | 2097897..2098946 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| ORI87_RS10235 (2098960) | 2098960..2099712 | + | 753 | WP_001047135.1 | antitermination protein | - |
| ORI87_RS10240 (2099990) | 2099990..2100079 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| ORI87_RS10245 (2100134) | 2100134..2100346 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| ORI87_RS10250 (2100647) | 2100647..2100862 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| ORI87_RS10255 (2101226) | 2101226..2101396 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| ORI87_RS10260 (2101616) | 2101616..2101831 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| inside | Prophage | - | - | 2077738..2111199 | 33461 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|