Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 2239698..2240224 | Replicon | chromosome |
| Accession | NZ_CP104326 | ||
| Organism | Escherichia coli strain THB42-F1 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | N0470_RS10845 | Protein ID | WP_000323025.1 |
| Coordinates | 2239937..2240224 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | N0470_RS10840 | Protein ID | WP_000534858.1 |
| Coordinates | 2239698..2239937 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N0470_RS10780 (2234725) | 2234725..2235492 | - | 768 | Protein_2104 | exonuclease | - |
| N0470_RS10785 (2235585) | 2235585..2235776 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| N0470_RS10790 (2235773) | 2235773..2235961 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| N0470_RS10795 (2236529) | 2236529..2236747 | - | 219 | WP_001171942.1 | protein YdfC | - |
| N0470_RS10800 (2236777) | 2236777..2236905 | - | 129 | WP_000344964.1 | protein YdfB | - |
| N0470_RS10805 (2236907) | 2236907..2237062 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| N0470_RS10810 (2237229) | 2237229..2237636 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| N0470_RS10815 (2237720) | 2237720..2237950 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| N0470_RS10820 (2237934) | 2237934..2238212 | + | 279 | Protein_2112 | hypothetical protein | - |
| N0470_RS10825 (2238247) | 2238247..2238396 | + | 150 | WP_011443592.1 | protein YdfW | - |
| N0470_RS10830 (2238833) | 2238833..2239165 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| N0470_RS10835 (2239368) | 2239368..2239673 | - | 306 | WP_001326990.1 | protein YdfV | - |
| N0470_RS10840 (2239698) | 2239698..2239937 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| N0470_RS10845 (2239937) | 2239937..2240224 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| N0470_RS10850 (2240296) | 2240296..2240451 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| N0470_RS10855 (2240668) | 2240668..2240919 | + | 252 | WP_000980994.1 | protein Rem | - |
| N0470_RS10860 (2240986) | 2240986..2241264 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| N0470_RS10865 (2241266) | 2241266..2242315 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| N0470_RS10870 (2242329) | 2242329..2243081 | + | 753 | WP_001047135.1 | antitermination protein | - |
| N0470_RS10875 (2243359) | 2243359..2243448 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| N0470_RS10880 (2243503) | 2243503..2243715 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| N0470_RS10885 (2244016) | 2244016..2244231 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| N0470_RS10890 (2244595) | 2244595..2244765 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| N0470_RS10895 (2244985) | 2244985..2245200 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| inside | Prophage | - | - | 2221107..2254568 | 33461 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|