Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/RHH(antitoxin) |
Location | 3297203..3297730 | Replicon | chromosome |
Accession | NZ_CP104022 | ||
Organism | Erwinia amylovora strain Ea102 |
Toxin (Protein)
Gene name | relE | Uniprot ID | D4HV72 |
Locus tag | MTP49_RS14935 | Protein ID | WP_004155192.1 |
Coordinates | 3297203..3297478 (-) | Length | 92 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | D4HV71 |
Locus tag | MTP49_RS14940 | Protein ID | WP_004155191.1 |
Coordinates | 3297482..3297730 (-) | Length | 83 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
MTP49_RS14925 (MTP49_14925) | 3292922..3296287 | + | 3366 | WP_004155194.1 | ATP-binding protein | - |
MTP49_RS14930 (MTP49_14930) | 3296584..3296784 | - | 201 | Protein_2875 | transposase | - |
MTP49_RS14935 (MTP49_14935) | 3297203..3297478 | - | 276 | WP_004155192.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
MTP49_RS14940 (MTP49_14940) | 3297482..3297730 | - | 249 | WP_004155191.1 | ribbon-helix-helix domain-containing protein | Antitoxin |
MTP49_RS14945 (MTP49_14945) | 3297827..3298660 | - | 834 | WP_004155190.1 | DUF4942 domain-containing protein | - |
MTP49_RS14950 (MTP49_14950) | 3298773..3299093 | - | 321 | WP_004155189.1 | TA system toxin CbtA family protein | - |
MTP49_RS14955 (MTP49_14955) | 3299130..3299453 | - | 324 | WP_004155188.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
MTP49_RS14960 (MTP49_14960) | 3299466..3299936 | - | 471 | WP_004155187.1 | DNA repair protein RadC | - |
MTP49_RS14965 (MTP49_14965) | 3300007..3300581 | - | 575 | Protein_2882 | DUF945 domain-containing protein | - |
MTP49_RS14970 (MTP49_14970) | 3300806..3301048 | - | 243 | WP_004155184.1 | hypothetical protein | - |
MTP49_RS14975 (MTP49_14975) | 3302258..3302455 | + | 198 | WP_004155182.1 | AlpA family phage regulatory protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
inside | Genomic island | - | - | 3297203..3320361 | 23158 | ||
flank | IS/Tn | - | - | 3296560..3296784 | 224 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A831EQZ9 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A831A0W7 |