23738

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) dhiT-phd/-
Location 459604..460008 Replicon chromosome II
Accession NC_012583
Organism Vibrio cholerae O395

Toxin (Protein)


Gene name dhiT Uniprot ID A0A086SLD6
Locus tag VC395_RS16685 Protein ID WP_001114075.1
Coordinates 459739..460008 (+) Length 90 a.a.

Antitoxin (Protein)


Gene name phd Uniprot ID -
Locus tag VC395_RS20935 Protein ID WP_099607150.1
Coordinates 459604..459708 (+) Length 35 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
VC395_RS16645 454637..455554 + 918 WP_000186333.1 alpha/beta hydrolase -
VC395_RS16650 455762..456004 + 243 WP_000107462.1 hypothetical protein -
VC395_RS16655 456179..456568 + 390 WP_001081302.1 hypothetical protein -
VC395_RS16660 456704..456913 + 210 Protein_484 GNAT family N-acetyltransferase -
VC395_RS16665 457032..457469 + 438 WP_000503164.1 IS200/IS605-like element IS1004 family transposase -
VC395_RS16670 457533..457751 + 219 WP_071908318.1 GNAT family N-acetyltransferase -
VC395_RS16675 457926..458798 + 873 WP_000254716.1 DUF3800 domain-containing protein -
VC395_RS16680 458948..459547 + 600 WP_001891245.1 glutathione S-transferase N-terminal domain-containing protein -
VC395_RS20935 459604..459708 + 105 WP_099607150.1 acetyltransferase Antitoxin
VC395_RS16685 459739..460008 + 270 WP_001114075.1 DUF4160 domain-containing protein Toxin
VC395_RS16690 460002..460523 + 522 WP_000921691.1 DUF2442 domain-containing protein -
VC395_RS20685 460822..460947 + 126 WP_001905700.1 DUF645 family protein -
VC395_RS16705 461198..461593 + 396 WP_001000867.1 hypothetical protein -
VC395_RS16710 461732..462010 - 279 WP_000578476.1 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family -
VC395_RS16715 462007..462291 - 285 WP_000381183.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
VC395_RS16720 462485..463000 + 516 WP_000343779.1 GNAT family N-acetyltransferase -
VC395_RS16725 463184..463597 + 414 WP_000049420.1 VOC family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 427343..471178 43835
- inside Integron - - 450510..464084 13574
flank IS/Tn - - 457032..457469 437


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Protein of unknown function DUF4160

(9-74)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10310.94 Da        Isoelectric Point: 6.6303

>T23738 WP_001114075.1 NC_012583:459739-460008 [Vibrio cholerae O395]
MPEIDALLGLSFCLYFFDNKQHKLPHIHVKYGSYELIIAIETGECLEGYLPNKQRKRAENHILEHREQLMVMWNKAVNGE
NPGKLGDLC

Download         Length: 270 bp

>T23738 NC_012583:459739-460008 [Vibrio cholerae O395]
ATGCCAGAGATTGATGCCCTATTAGGTCTTTCATTTTGCTTGTACTTCTTTGATAACAAGCAGCATAAATTACCTCATAT
TCACGTTAAGTACGGTAGTTACGAGCTAATTATTGCTATTGAAACAGGTGAGTGTTTAGAGGGTTACTTACCCAATAAGC
AACGAAAACGTGCTGAAAACCATATTCTTGAACATCGAGAGCAATTGATGGTGATGTGGAATAAAGCGGTGAATGGTGAA
AATCCAGGTAAGTTAGGTGATTTATGTTGA

Antitoxin


Download         Length: 35 a.a.        Molecular weight: 3991.79 Da        Isoelectric Point: 9.2853

>AT23738 WP_099607150.1 NC_012583:459604-459708 [Vibrio cholerae O395]
VVSVVVFEFSSMRCQPLRRALYAYRNCLLKDTLL

Download         Length: 105 bp

>AT23738 NC_012583:459604-459708 [Vibrio cholerae O395]
GTGGTTTCGGTTGTTGTGTTTGAGTTTAGTAGTATGCGCTGCCAGCCCCTTAGGCGGGCGTTATATGCTTATAGGAATTG
TCTCCTAAAGGATACGCTGCTATAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A086SLD6

Antitoxin

Source ID Structure

References