Detailed information of TA system
Overview
TA module
| Type | I | Classification (family/domain) | IasE-IsrA/SymE(toxin) |
| Location | 339230..339662 | Replicon | chromosome |
| Accession | NZ_CP067397 | ||
| Organism | Salmonella enterica subsp. enterica serovar Typhimurium strain LB5000 | ||
Toxin (Protein)
| Gene name | IasE | Uniprot ID | E8XIW0 |
| Locus tag | JJB81_RS01500 | Protein ID | WP_000994224.1 |
| Coordinates | 339230..339505 (-) | Length | 92 a.a. |
Antitoxin (RNA)
| Gene name | IsrA | ||
| Locus tag | - | ||
| Coordinates | 339240..339662 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJB81_RS01480 | 336541..336804 | + | 264 | WP_000932531.1 | hypothetical protein | - |
| JJB81_RS01485 | 336868..337737 | + | 870 | Protein_288 | polymorphic toxin type 47 domain-containing protein | - |
| JJB81_RS01490 | 337731..338177 | + | 447 | WP_000935097.1 | protein SciX | - |
| JJB81_RS01495 | 338740..339177 | + | 438 | WP_000943619.1 | immunity 26/phosphotriesterase HocA family protein | - |
| JJB81_RS01500 | 339230..339505 | - | 276 | WP_000994224.1 | SymE family type I addiction module toxin | Toxin |
| - | 339240..339662 | + | 423 | - | - | Antitoxin |
| JJB81_RS23705 | 339690..339863 | + | 174 | WP_088131292.1 | RHS repeat-associated core domain-containing protein | - |
| JJB81_RS01510 | 339946..340254 | + | 309 | WP_010988969.1 | hypothetical protein | - |
| JJB81_RS01515 | 340356..340604 | - | 249 | WP_001738030.1 | SymE family type I addiction module toxin | - |
| JJB81_RS01520 | 340657..341361 | + | 705 | Protein_295 | integrase core domain-containing protein | - |
| JJB81_RS01525 | 342111..342623 | + | 513 | WP_010988970.1 | Saf-pilin pilus formation protein SafA | - |
| JJB81_RS01530 | 342707..343444 | + | 738 | WP_001535430.1 | pili assembly chaperone SafB | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 316095..351252 | 35157 | |
| flank | IS/Tn | - | - | 341080..341361 | 281 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 92 a.a. Molecular weight: 10032.36 Da Isoelectric Point: 6.4704
>T186240 WP_000994224.1 NZ_CP067397:c339505-339230 [Salmonella enterica subsp. enterica serovar Typhimurium]
MNASGVSVRHINSETCMTACYSQIPSQHLKGDWQEEAGFETGHGVTVKISEGCLILIAETDEVRDLRKELYQVKKSMKHI
KAGVNNVVNGD
MNASGVSVRHINSETCMTACYSQIPSQHLKGDWQEEAGFETGHGVTVKISEGCLILIAETDEVRDLRKELYQVKKSMKHI
KAGVNNVVNGD
Download Length: 276 bp
>T186240 NZ_CP089301:1155560-1156453 [Novosphingobium kaempferiae]
ATGGCTGAGCCCAAGTCCGCGAGTGCAGCCTCGATCAAGCAGCGGTTGCTGAACATCGCCCGCAGGTCGGAGCGCCCCTA
TGATGTGGTGCTTGTCCGCTACGCGCTTGAGCGGCTGCTCTACCGTCTCTCGATTTCGGCGGAGCGGGACCGTTTCGTCC
TGAAGGGAGGCATGCTTGTTACCCTCTGGATCGAAGGAGGACATCGCGAAACCCGCGATGCGGACTTCCTTGGCCATGGA
GAGGCAGGCAGCGAGCATGTCCGCAGGGTTTTTGAGGGGATTATGTCGATTGACGTGAACGATGGCCTCACCTTCGACAC
TGCGAACATCAGGGTCGGACCGATCCGGGATGAGAGTGAGTATAGCGGCATTCGGCTGCGCACGACGGCCCATCTCGAAC
GCACCCGCATTCCCGTCACGATTGACATCGGTTTCGGGGACGCCCTGTCATCGGAAGCGGAGCGTCTCGATTACCCAACG
CTGCTCGACATGGGGGTGCCGCGTATCAGAACCTACCCTCCGGCCGCCGTGCTTGCTGAGAAATTTCAGGCGATTGTCGC
GCTTGGCATCATCAATGGCCGCATGAAGGACTATTTTGATCTCTGGGCCGTTCCGCAGACGCGTCTGATTGACGATGAAG
AATTAGATGCCGCAGTGAAGGCCACCTTCCTGCGCCGCCGCACTCCGGTTCCTGACAAACGGCCGCCGGGTCTGTCTGAG
CCGTTTGCCATCGATCCTGCCAAGGAGGCGCAGTGGCAGGCCTATGCGCGGTCGGTTCAGCTGGTTGGCTTGTCCCTCCA
AGCAGTCACCGACGAGATATGGAAGGTCTTCGGCCCGACCTGCGCCCGCGTCGCAGCGGGATCGAGAAAAGACTCACCGA
AAAACACTCCCTAG
ATGGCTGAGCCCAAGTCCGCGAGTGCAGCCTCGATCAAGCAGCGGTTGCTGAACATCGCCCGCAGGTCGGAGCGCCCCTA
TGATGTGGTGCTTGTCCGCTACGCGCTTGAGCGGCTGCTCTACCGTCTCTCGATTTCGGCGGAGCGGGACCGTTTCGTCC
TGAAGGGAGGCATGCTTGTTACCCTCTGGATCGAAGGAGGACATCGCGAAACCCGCGATGCGGACTTCCTTGGCCATGGA
GAGGCAGGCAGCGAGCATGTCCGCAGGGTTTTTGAGGGGATTATGTCGATTGACGTGAACGATGGCCTCACCTTCGACAC
TGCGAACATCAGGGTCGGACCGATCCGGGATGAGAGTGAGTATAGCGGCATTCGGCTGCGCACGACGGCCCATCTCGAAC
GCACCCGCATTCCCGTCACGATTGACATCGGTTTCGGGGACGCCCTGTCATCGGAAGCGGAGCGTCTCGATTACCCAACG
CTGCTCGACATGGGGGTGCCGCGTATCAGAACCTACCCTCCGGCCGCCGTGCTTGCTGAGAAATTTCAGGCGATTGTCGC
GCTTGGCATCATCAATGGCCGCATGAAGGACTATTTTGATCTCTGGGCCGTTCCGCAGACGCGTCTGATTGACGATGAAG
AATTAGATGCCGCAGTGAAGGCCACCTTCCTGCGCCGCCGCACTCCGGTTCCTGACAAACGGCCGCCGGGTCTGTCTGAG
CCGTTTGCCATCGATCCTGCCAAGGAGGCGCAGTGGCAGGCCTATGCGCGGTCGGTTCAGCTGGTTGGCTTGTCCCTCCA
AGCAGTCACCGACGAGATATGGAAGGTCTTCGGCCCGACCTGCGCCCGCGTCGCAGCGGGATCGAGAAAAGACTCACCGA
AAAACACTCCCTAG
Antitoxin
Download Length: 423 bp
>AT186240 NZ_CP067397:339240-339662 [Salmonella enterica subsp. enterica serovar Typhimurium]
TTCACCACATTATTTACCCCCGCCTTAATATGCTTCATCGACTTTTTCACCTGATAAAGCTCCTTCCGTAGATCCCTCAC
TTCGTCCGTCTCTGCAATCAGGATCAAACACCCCTCGGAGATCTTCACGGTGACGCCGTGCCCGGTCTCAAATCCCGCTT
CTTCCTGCCAGTCACCCTTAAGGTGCTGGCTGGGGATTTGTGAGTAACAGGCGGTCATGCAGGTTTCGCTGTTGATATGG
CGGACGCTGACGCCGGAGGCATTCATATTTGCTGACTAAATAAATTCTTATTTATCCGCCGGATGCTGGCTGATTGTGGA
GCTCAGGGTGAGTGAGTATGGGCGCGACATCCTGGCACCGCGCCTCCCTCTCCCCGGCCAGCCCCGGCCGGTGATGAGCA
GCCGGCTGCCGGGGCCGTATTTT
TTCACCACATTATTTACCCCCGCCTTAATATGCTTCATCGACTTTTTCACCTGATAAAGCTCCTTCCGTAGATCCCTCAC
TTCGTCCGTCTCTGCAATCAGGATCAAACACCCCTCGGAGATCTTCACGGTGACGCCGTGCCCGGTCTCAAATCCCGCTT
CTTCCTGCCAGTCACCCTTAAGGTGCTGGCTGGGGATTTGTGAGTAACAGGCGGTCATGCAGGTTTCGCTGTTGATATGG
CGGACGCTGACGCCGGAGGCATTCATATTTGCTGACTAAATAAATTCTTATTTATCCGCCGGATGCTGGCTGATTGTGGA
GCTCAGGGTGAGTGAGTATGGGCGCGACATCCTGGCACCGCGCCTCCCTCTCCCCGGCCAGCCCCGGCCGGTGATGAGCA
GCCGGCTGCCGGGGCCGTATTTT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
