Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | I | Classification (family/domain) | yonT-as-bsrG/- |
Location | 2213085..2213302 | Replicon | chromosome |
Accession | NZ_CP050532 | ||
Organism | Bacillus subtilis subsp. subtilis str. SMY |
Toxin (Protein)
Gene name | yonT | Uniprot ID | O31941 |
Locus tag | HCN55_RS11360 | Protein ID | WP_009967515.1 |
Coordinates | 2213085..2213261 (-) | Length | 59 a.a. |
Antitoxin (RNA)
Gene name | as-bsrG | ||
Locus tag | - | ||
Coordinates | 2213202..2213302 (+) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
HCN55_RS11330 | 2208273..2208500 | - | 228 | WP_004399298.1 | helix-turn-helix transcriptional regulator | - |
HCN55_RS11335 | 2208761..2210077 | - | 1317 | WP_004399369.1 | hypothetical protein | - |
HCN55_RS11340 | 2210434..2210940 | - | 507 | WP_004399486.1 | hypothetical protein | - |
HCN55_RS11345 | 2211268..2212500 | - | 1233 | WP_004399445.1 | hypothetical protein | - |
HCN55_RS11350 | 2212582..2212770 | - | 189 | WP_004399547.1 | hypothetical protein | - |
HCN55_RS11355 | 2212815..2213066 | - | 252 | WP_010886546.1 | hypothetical protein | - |
HCN55_RS11360 | 2213085..2213261 | - | 177 | WP_009967515.1 | hypothetical protein | Toxin |
- | 2213202..2213302 | + | 101 | NuclAT_2 | - | Antitoxin |
- | 2213202..2213302 | + | 101 | NuclAT_2 | - | Antitoxin |
- | 2213202..2213302 | + | 101 | NuclAT_2 | - | Antitoxin |
- | 2213202..2213302 | + | 101 | NuclAT_2 | - | Antitoxin |
HCN55_RS11365 | 2213636..2214247 | - | 612 | WP_009967516.1 | lipoprotein | - |
HCN55_RS11370 | 2214362..2214688 | - | 327 | WP_009967517.1 | helix-turn-helix domain-containing protein | - |
HCN55_RS11375 | 2215641..2215835 | + | 195 | WP_004399291.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
inside | Prophage | - | - | 2144927..2279709 | 134782 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 59 a.a. Molecular weight: 6882.45 Da Isoelectric Point: 12.8833
>T153030 WP_009967515.1 NZ_CP050532:c2213261-2213085 [Bacillus subtilis subsp. subtilis str. SMY]
VLEKMGIVVAFLISLTVLTINSLTIVEKVRNLKNGTSKKKKRIRKRLRPKRQRQRIRR
VLEKMGIVVAFLISLTVLTINSLTIVEKVRNLKNGTSKKKKRIRKRLRPKRQRQRIRR
Download Length: 177 bp
>T153030 NZ_CP066748:c659096-658632 [Escherichia coli O157:H7]
ATGGATTTTCCACAAAGGGTTAATGGTTGGGCGCTATATGCTCATCCCTGTTTTCAGGAAACCTACGACGCTTTAGTTGC
CGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCTGCCACAAAGTTATTGGCGGTGGTCCATA
AAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAAT
AAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGCTATCGTCTCTTCTTTCGTTACAGTGAAAAAGAGAAAGTCATCAT
TCTGGGATGGATGAACGATGAAAACACGCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGCAAAATGT
TAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAGACAGAAGAAACCCATTGA
ATGGATTTTCCACAAAGGGTTAATGGTTGGGCGCTATATGCTCATCCCTGTTTTCAGGAAACCTACGACGCTTTAGTTGC
CGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCTGCCACAAAGTTATTGGCGGTGGTCCATA
AAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAAT
AAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGCTATCGTCTCTTCTTTCGTTACAGTGAAAAAGAGAAAGTCATCAT
TCTGGGATGGATGAACGATGAAAACACGCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGCAAAATGT
TAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAGACAGAAGAAACCCATTGA
Antitoxin
Download Length: 101 bp
>AT153030 NZ_CP050532:2213202-2213302 [Bacillus subtilis subsp. subtilis str. SMY]
GATTGTAAGAACCGTTAAAGATATGAGGAAAGCAACTACGATACCCATTTTCTCAAGCACTATGTACACCTCCTTTCCTA
TGACTCTATTATAACATAATT
GATTGTAAGAACCGTTAAAGATATGAGGAAAGCAACTACGATACCCATTTTCTCAAGCACTATGTACACCTCCTTTCCTA
TGACTCTATTATAACATAATT
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|