Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-RelB
Location 2238802..2239328 Replicon chromosome
Accession NZ_CP043209
Organism Escherichia coli O16:H48 strain PG20180052

Toxin (Protein)


Gene name relE Uniprot ID S1EXL1
Locus tag FYA06_RS10845 Protein ID WP_000323025.1
Coordinates 2239041..2239328 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID S1F6D3
Locus tag FYA06_RS10840 Protein ID WP_000534858.1
Coordinates 2238802..2239041 (+) Length 80 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FYA06_RS10780 2233829..2234596 - 768 Protein_2099 exonuclease -
FYA06_RS10785 2234689..2234880 - 192 WP_001083297.1 lysis protein YdfD -
FYA06_RS10790 2234877..2235065 - 189 WP_000854559.1 cell division inhibition protein DicB -
FYA06_RS10800 2235633..2235851 - 219 WP_001171942.1 hypothetical protein -
FYA06_RS10805 2236011..2236166 - 156 WP_000379575.1 DUF1391 family protein -
FYA06_RS10810 2236333..2236740 - 408 WP_000448564.1 DNA-binding transcriptional dual regulator DicA -
FYA06_RS10815 2236824..2237054 + 231 WP_000920568.1 dicB transcriptional regulator DicC -
FYA06_RS10820 2237038..2237316 + 279 Protein_2106 hypothetical protein -
FYA06_RS10825 2237351..2237500 + 150 WP_011443592.1 hypothetical protein -
FYA06_RS10830 2237937..2238269 - 333 WP_001301033.1 protein FlxA -
FYA06_RS10835 2238472..2238777 - 306 WP_001326990.1 hypothetical protein -
FYA06_RS10840 2238802..2239041 + 240 WP_000534858.1 type II toxin-antitoxin system antitoxin RelB Antitoxin
FYA06_RS10845 2239041..2239328 + 288 WP_000323025.1 type II toxin-antitoxin system mRNA interferase RelE Toxin
FYA06_RS10850 2239400..2239555 + 156 WP_000813254.1 type I toxin-antitoxin system toxin HokD -
FYA06_RS10855 2239772..2240023 + 252 WP_000980994.1 hypothetical protein -
FYA06_RS10860 2240090..2240368 + 279 WP_012304870.1 hypothetical protein -
FYA06_RS10865 2240370..2241419 + 1050 WP_001265198.1 DUF968 domain-containing protein -
FYA06_RS10870 2241433..2242185 + 753 WP_001047135.1 antitermination protein -
FYA06_RS10875 2242463..2242552 - 90 WP_120795389.1 hypothetical protein -
FYA06_RS10880 2242607..2242819 - 213 WP_000087756.1 cold shock-like protein CspF -
FYA06_RS10885 2243120..2243335 + 216 WP_000066484.1 cold shock-like protein CspB -
FYA06_RS23155 2243699..2243869 - 171 WP_211180497.1 putative zinc-binding protein YnfU -
FYA06_RS10890 2244089..2244304 + 216 WP_000839590.1 phage lysis protein EssD -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Prophage - - 2220211..2253672 33461


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-86)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-79)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11225.22 Da        Isoelectric Point: 10.1967

>T137843 WP_000323025.1 NZ_CP043209:2239041-2239328 [Escherichia coli O16:H48]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL

Download         Length: 288 bp

>T137843 NZ_CP043209:2239041-2239328 [Escherichia coli O16:H48]
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA

Antitoxin


Download         Length: 80 a.a.        Molecular weight: 9071.48 Da        Isoelectric Point: 4.5230

>AT137843 WP_000534858.1 NZ_CP043209:2238802-2239041 [Escherichia coli O16:H48]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL

Download         Length: 240 bp

>AT137843 NZ_CP043209:2238802-2239041 [Escherichia coli O16:H48]
ATGGGTAGCATTAACCTGCGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGTGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 4V7K
PDB 4V7J
PDB 4FXI
PDB 4FXE
PDB 2KC8
PDB 4FXH
PDB 2KC9

Antitoxin

Source ID Structure
PDB 4FXE
PDB 2KC8
PDB 2K29
AlphaFold DB A0A4V1CTS8

References