Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) ralRA/-
Location 2113051..2113422 Replicon chromosome
Accession NZ_CP042846
Organism Escherichia coli strain JME64

Toxin (Protein)


Gene name ralR Uniprot ID F4VC37
Locus tag FVE20_RS10290 Protein ID WP_001317028.1
Coordinates 2113228..2113422 (-) Length 65 a.a.

Antitoxin (RNA)


Gene name ralA
Locus tag -
Coordinates 2113051..2113229 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FVE20_RS10265 2109006..2110379 + 1374 WP_000123737.1 ATP-dependent RNA helicase DbpA -
FVE20_RS10270 2110508..2111443 - 936 WP_001157406.1 tRNA 2-thiocytidine(32) synthetase TtcA -
FVE20_RS10275 2111495..2112730 - 1236 WP_000040852.1 site-specific integrase -
FVE20_RS10280 2112732..2112947 - 216 WP_000079604.1 excisionase XisR -
FVE20_RS10285 2113026..2113235 - 210 WP_000276809.1 double-strand break reduction protein RcbA -
- 2113051..2113229 + 179 NuclAT_0 - Antitoxin
- 2113051..2113229 + 179 NuclAT_0 - Antitoxin
- 2113051..2113229 + 179 NuclAT_0 - Antitoxin
- 2113051..2113229 + 179 NuclAT_0 - Antitoxin
FVE20_RS10290 2113228..2113422 - 195 WP_001317028.1 type I toxin-antitoxin system endodeoxyribonuclease toxin RalR Toxin
FVE20_RS10295 2113479..2114288 - 810 WP_000166319.1 recombination protein RecT -
FVE20_RS10300 2114281..2116881 - 2601 WP_000105143.1 exodeoxyribonuclease VIII -
FVE20_RS10305 2116983..2117258 - 276 WP_000632297.1 protein RacC -
FVE20_RS10310 2117333..2117503 - 171 WP_001352098.1 conserved protein, Rac prophage -
FVE20_RS10315 2117503..2117724 - 222 WP_000560225.1 killing protein KilR -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Prophage - - 2111495..2133169 21674


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Endodeoxyribonuclease toxin RalR

(6-54)


Sequences

Toxin        


Download         Length: 65 a.a.        Molecular weight: 7018.89 Da        Isoelectric Point: 8.9538

>T136214 WP_001317028.1 NZ_CP042846:c2113422-2113228 [Escherichia coli]
MRYDNVKPCPFCGCPSVTVKAISGYYRAKCNGCESRTGYGGSEKEALERWNKRTTGNNNGGVHV

Download         Length: 195 bp

>T136214 NZ_CP042846:c2113422-2113228 [Escherichia coli]
ATGAGATATGACAATGTTAAACCATGTCCATTTTGTGGTTGTCCATCAGTAACGGTGAAAGCCATTTCAGGATATTACCG
AGCGAAGTGTAACGGATGCGAATCCCGAACCGGTTATGGTGGAAGTGAAAAAGAAGCACTCGAAAGATGGAATAAACGAA
CCACTGGAAATAATAATGGAGGTGTTCATGTATAA

Antitoxin


Download         Length: 179 bp

>AT136214 NZ_CP042846:2113051-2113229 [Escherichia coli]
GAGGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTCTCTGGAAACGCCTGCTTCTTTTTTACCTGA
GAGCATTTTTTCGCATTCTGATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCACCTTCCTTTT
CAATAGTGGCGGTAATTTT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7L6LHV7

Antitoxin

Download structure file

References