TAfinder detailed results

Overview

Job ID wrVbGpMxFf
Sequence name NZ_CP026085.1 Escherichia coli strain DH5alpha chromosome, complete genome
Predicted type IV

Toxin (Protein)


Predicted family ykfI (T10198) Predicted domain CbtA_toxin (CbtA)
Locus tag orf3885 Length 113 a.a.
Coordinates 4136630..4136971 (+)

Antitoxin (Protein)


Predicted family yeeU (AT1042) Predicted domain CbeA_antitoxin (CbeA)
Locus tag orf3884 Length 104 a.a.
Coordinates 4136285..4136599 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
orf3879 4132211..4132429 - 219 ORF3879 Predicted ORF by PRODIGAL Version 1.20 -
orf3880 4132547..4133161 - 615 ORF3880 Predicted ORF by PRODIGAL Version 1.20 -
orf3881 4133754..4134707 + 954 ORF3881 Predicted ORF by PRODIGAL Version 1.20 -
orf3882 4134943..4135761 + 819 ORF3882 Predicted ORF by PRODIGAL Version 1.20 -
orf3883 4135791..4136264 + 474 ORF3883 Predicted ORF by PRODIGAL Version 1.20 -
orf3884 4136285..4136599 + 315 ORF3884 Predicted ORF by PRODIGAL Version 1.20 Antitoxin
orf3885 4136630..4136971 + 342 ORF3885 Predicted ORF by PRODIGAL Version 1.20 Toxin
orf3886 4137086..4137919 + 834 ORF3886 Predicted ORF by PRODIGAL Version 1.20 -
orf3887 4137989..4138384 + 396 ORF3887 Predicted ORF by PRODIGAL Version 1.20 -
orf3888 4138377..4139324 + 948 ORF3888 Predicted ORF by PRODIGAL Version 1.20 -
orf3889 4139717..4140982 + 1266 ORF3889 Predicted ORF by PRODIGAL Version 1.20 -

Domains

The domains were predicted by HMMER and were sorted by score.

Toxin

CbtA_toxin (CbtA) (E-value: 2e-57, Score:190.1)

(1-109)

Antitoxin

CbeA_antitoxin (CbeA) (E-value: 2.2e-47, Score:157.9)

(1-101)


Sequences

Toxin        


Download         Length: 113 a.a.        Molecular weight: 13060.08 Da        Isoelectric Point: 9.4583

>ORF3885 TA_28 Toxin
MKIIPATTLRATTSYLSPVVVWQTLLARLLEQHYGLNLNDTPFNNEKVIQEHIDAGITLV
DAVNFLVEKYELIRIDRKGFSWQEQTPYLRAVDILRARQATGLLRRCYNTTAR

Download         Length: 342 bp

>ORF3885 TA_28 Toxin
ATGAAAATTATACCTGCAACGACGCTGCGGGCGACGACGTCATATCTGTCGCCTGTCGTG
GTCTGGCAAACATTACTGGCCCGCCTGCTGGAGCAGCACTACGGGCTGAATCTTAATGAC
ACACCATTCAACAATGAAAAGGTGATTCAGGAACACATAGACGCCGGGATCACTCTGGTC
GATGCCGTCAATTTTCTGGTGGAGAAGTACGAATTGATCCGTATCGACAGGAAAGGATTT
AGCTGGCAGGAACAGACGCCTTATCTTCGTGCGGTCGATATTTTGCGGGCGCGGCAGGCT
ACAGGTCTGCTGCGCCGCTGCTATAACACCACGGCACGGTGA

Antitoxin


Download         Length: 104 a.a.        Molecular weight: 11796.58 Da        Isoelectric Point: 7.2118

>ORF3884 TA_28 Antitoxin
MQQEWGLPCTVTPRFTARLVQERHNLHYLADRAAITGKFSSPDLLHIDQAFPVLMKQLEL
KLADGELSPWQQRTVTLYAKGLTCEADTLGSCGYVYIAIYPTQR

Download         Length: 315 bp

>ORF3884 TA_28 Antitoxin
ATGCAACAAGAATGGGGGCTTCCCTGTACCGTAACACCACGCTTCACTGCTCGACTGGTA
CAGGAAAGACATAACCTGCATTACCTGGCTGATCGGGCCGCAATCACCGGGAAATTCAGC
TCCCCGGATCTGCTGCATATCGACCAGGCTTTTCCGGTGCTGATGAAACAACTGGAGCTG
AAACTGGCTGACGGTGAACTCTCCCCCTGGCAACAACGTACCGTCACGCTATACGCCAAA
GGACTAACCTGCGAAGCCGATACGCTGGGTTCCTGTGGTTACGTCTATATCGCTATTTAT
CCCACTCAACGCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
T10198 Escherichia coli str. K-12 substr. MG1655

76.991

100

0.77
T10199 Escherichia coli str. K-12 substr. MG1655

71.429

96.33

0.664
T10128 Erwinia amylovora strain CTBT3-1 tig00000000

69.231

98.113

0.637
T1042 Escherichia coli str. K-12 substr. MG1655

58.491

85.484

0.549
Protein Organism Identities (%) Coverage (%) Ha-value
AT1042 Escherichia coli str. K-12 substr. MG1655

73.469

80.328

0.692
AT10199 Escherichia coli str. K-12 substr. MG1655

62

95.238

0.596
AT10198 Escherichia coli str. K-12 substr. MG1655

62.626

94.286

0.596
AT10128 Erwinia amylovora strain CTBT3-1 tig00000000

58.824

95.327

0.577