TAfinder detailed results
Overview
| Job ID | wrVbGpMxFf | ||
| Sequence name | NZ_CP026085.1 Escherichia coli strain DH5alpha chromosome, complete genome | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | stbD (AT6130) | Predicted domain | PRK02854 (DnaT) |
| Locus tag | orf3874 | Length | 179 a.a. |
| Coordinates | 4123222..4123761 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| orf3864 | 4118699..4118935 | - | 237 | ORF3864 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3865 | 4119076..4119864 | + | 789 | ORF3865 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3866 | 4119902..4120579 | - | 678 | ORF3866 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3867 | 4120537..4121262 | - | 726 | ORF3867 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3868 | 4121881..4122651 | + | 771 | ORF3868 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3869 | 4122642..4123115 | + | 474 | ORF3869 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3870 | 4123222..4123761 | + | 540 | ORF3870 | Predicted ORF by PRODIGAL Version 1.20 | Antitoxin |
| orf3871 | 4123764..4124501 | + | 738 | ORF3871 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3872 | 4124550..4125044 | + | 495 | ORF3872 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3873 | 4125298..4127310 | + | 2013 | ORF3873 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3874 | 4127414..4128622 | + | 1209 | ORF3874 | Predicted ORF by PRODIGAL Version 1.20 | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 19455.12 Da Isoelectric Point: 4.9645
>ORF3870 Orphan_TA_95 Antitoxin
MSSRVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKL
ARPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEE
LASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDSQIPPGFRG
MSSRVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKL
ARPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEE
LASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDSQIPPGFRG
Download Length: 540 bp
>ORF3870 Orphan_TA_95 Antitoxin
ATGTCTTCCAGAGTTTTGACCCCGGACGTCGTTGGTATTGACGCCCTGGTACACGATCAC
CAAACCGTTCTGGCAAAAGCTGAAGGCGGTGTGGTTGCCGTATTTGCTAACAATGCCCCG
GCGTTTTATGCCGTCACGCCTGCACGCCTGGCTGAACTGCTGGCGCTGGAAGAAAAGCTG
GCGCGTCCGGGAAGCGATGTCGCTCTGGACGATCAACTCTATCAGGAACCGCAAGCCGCT
CCCGTTGCTGTCCCCATGGGGAAATTCGCCATGTATCCGGACTGGCAACCCGATGCCGAC
TTTATCCGCCTGGCGGCGCTATGGGGCGTGGCGCTAAGAGAGCCGGTGACCACCGAAGAA
CTGGCCTCATTCATTGCCTACTGGCAGGCGGAAGGTAAAGTCTTTCACCATGTGCAGTGG
CAACAAAAACTGGCGCGCAGCCTGCAAATCGGTCGTGCCAGCAACGGCGGACTGCCGAAA
CGAGATGTGAATACGGTCAGCGAACCTGACAGCCAAATTCCACCAGGATTCAGAGGGTAA
ATGTCTTCCAGAGTTTTGACCCCGGACGTCGTTGGTATTGACGCCCTGGTACACGATCAC
CAAACCGTTCTGGCAAAAGCTGAAGGCGGTGTGGTTGCCGTATTTGCTAACAATGCCCCG
GCGTTTTATGCCGTCACGCCTGCACGCCTGGCTGAACTGCTGGCGCTGGAAGAAAAGCTG
GCGCGTCCGGGAAGCGATGTCGCTCTGGACGATCAACTCTATCAGGAACCGCAAGCCGCT
CCCGTTGCTGTCCCCATGGGGAAATTCGCCATGTATCCGGACTGGCAACCCGATGCCGAC
TTTATCCGCCTGGCGGCGCTATGGGGCGTGGCGCTAAGAGAGCCGGTGACCACCGAAGAA
CTGGCCTCATTCATTGCCTACTGGCAGGCGGAAGGTAAAGTCTTTCACCATGTGCAGTGG
CAACAAAAACTGGCGCGCAGCCTGCAAATCGGTCGTGCCAGCAACGGCGGACTGCCGAAA
CGAGATGTGAATACGGTCAGCGAACCTGACAGCCAAATTCCACCAGGATTCAGAGGGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT6130 | Erwinia pyrifoliae Ep1/96 |
34.524 |
100 |
0.162 |
| AT10166 | Xenorhabdus nematophila ATCC 19061 |
39.655 |
69.88 |
0.128 |
| AT6132 | Escherichia coli |
29.762 |
100 |
0.14 |
| AT6131 | Escherichia coli |
29.762 |
100 |
0.14 |
| AT173 | Vibrio cholerae O1 biovar El Tor str. N16961 |
32.927 |
100 |
0.151 |