MGE detailed information
MGE type: Prophage MGE length: 38611 bp
Accession: NZ_LR882052 Location: 2200582..2239192 Organism: Escherichia coli isolate 2015-01-466 Replicon: chromosome
Accession: NZ_LR882052 Location: 2200582..2239192 Organism: Escherichia coli isolate 2015-01-466 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QREC_RS10515 () | 2196481..2197701 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| QREC_RS10520 () | 2197826..2198521 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| QREC_RS10525 () | 2198474..2199766 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| QREC_RS10530 () | 2199925..2200539 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| QREC_RS10535 () | 2200582..2201436 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit | - |
| QREC_RS10540 () | 2201438..2202055 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| QREC_RS10545 () | 2202066..2204489 | - | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| QREC_RS10550 () | 2204550..2206976 | - | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
| QREC_RS10555 () | 2207175..2207480 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| QREC_RS10560 () | 2207588..2208298 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| QREC_RS10565 () | 2208301..2208861 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| QREC_RS10570 () | 2208896..2209237 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| QREC_RS10575 () | 2209372..2209698 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| QREC_RS10580 () | 2209904..2211118 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| QREC_RS10585 () | 2211130..2212149 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| QREC_RS10590 () | 2212207..2212317 | + | 111 | WP_001360138.1 | hypothetical protein | - |
| QREC_RS10595 () | 2212337..2213617 | - | 1281 | WP_000876958.1 | Putative defective protein IntQ ; Integrase | Integrase |
| QREC_RS10600 () | 2213652..2213903 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| QREC_RS10605 () | 2213976..2216447 | - | 2472 | WP_061362252.1 | exonuclease | - |
| QREC_RS10610 () | 2216540..2216731 | - | 192 | WP_191514956.1 | lysis protein YdfD | - |
| QREC_RS10615 () | 2216728..2216916 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| QREC_RS10620 () | 2217484..2217702 | - | 219 | WP_001171942.1 | hypothetical protein | - |
| QREC_RS10625 () | 2217862..2218017 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| QREC_RS10630 () | 2218184..2218591 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| QREC_RS10635 () | 2218675..2218905 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| QREC_RS10640 () | 2218801..2219184 | - | 384 | WP_191514957.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| QREC_RS10645 () | 2219181..2219585 | - | 405 | WP_000839179.1 | IS66 family transposase ISEc22 | Transposase |
| QREC_RS10650 () | 2219807..2220094 | + | 288 | Protein_2078 | hypothetical protein | - |
| QREC_RS10655 () | 2220863..2222176 | + | 1314 | WP_000589005.1 | ISNCY family transposase ISCARN112 | Transposase |
| QREC_RS10660 () | 2222613..2222945 | - | 333 | WP_001301033.1 | protein FlxA | - |
| QREC_RS10665 () | 2223148..2223453 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| QREC_RS10670 () | 2223478..2223717 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| QREC_RS10675 () | 2223717..2224004 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| QREC_RS10680 () | 2224076..2224231 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| QREC_RS10685 () | 2224448..2224699 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| QREC_RS10690 () | 2224766..2225044 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| QREC_RS10695 () | 2225046..2226095 | + | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| QREC_RS10700 () | 2226109..2226861 | + | 753 | WP_001047135.1 | antitermination protein | - |
| QREC_RS10705 () | 2227139..2227228 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| QREC_RS10710 () | 2227283..2227495 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| QREC_RS10715 () | 2227796..2228011 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| QREC_RS10720 () | 2228765..2228980 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| QREC_RS10725 () | 2228985..2229296 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| QREC_RS10730 () | 2229293..2229826 | + | 534 | WP_001092971.1 | lysozyme | - |
| QREC_RS10735 () | 2229823..2230320 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| QREC_RS10740 () | 2230683..2230895 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| QREC_RS10745 () | 2230906..2231094 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| QREC_RS10750 () | 2231097..2231162 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| QREC_RS10755 () | 2231242..2231397 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| QREC_RS10760 () | 2231569..2231742 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| QREC_RS10765 () | 2231894..2232304 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| QREC_RS10770 () | 2232362..2232595 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| QREC_RS10775 () | 2232984..2233529 | + | 546 | WP_000453611.1 | DNA-packaging protein | - |
| QREC_RS10780 () | 2233504..2234553 | + | 1050 | Protein_2104 | phage terminase large subunit family protein | - |
| QREC_RS10785 () | 2234575..2235309 | + | 735 | Protein_2105 | tail fiber protein | - |
| QREC_RS10790 () | 2235309..2235884 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| QREC_RS10795 () | 2235982..2236572 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| QREC_RS10800 () | 2236889..2237122 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| QREC_RS10805 () | 2237191..2237304 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| QREC_RS10810 () | 2237825..2239192 | + | 1368 | Protein_2110 | MHS family MFS transporter | - |
| QREC_RS10815 () | 2239281..2240741 | + | 1461 | WP_000527809.1 | mannitol dehydrogenase family protein | - |
| QREC_RS10820 () | 2240776..2240979 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| QREC_RS10825 () | 2241156..2241842 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| QREC_RS10830 () | 2241931..2242677 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.006 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.006 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.006 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.006 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.006 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.006 |