MGE detailed information
MGE type: Prophage MGE length: 33462 bp
Accession: NZ_LM995446 Location: 1579899..1613360 Organism: Escherichia coli strain K-12 substr. RV308 Replicon: chromosome
Accession: NZ_LM995446 Location: 1579899..1613360 Organism: Escherichia coli strain K-12 substr. RV308 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECRV308_RS07825 () | 1576414..1577160 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| ECRV308_RS07830 () | 1577249..1577935 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| ECRV308_RS07835 () | 1578112..1578315 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| ECRV308_RS07840 () | 1578350..1579810 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| ECRV308_RS07845 () | 1579899..1581266 | - | 1368 | Protein_1490 | MHS family MFS transporter | - |
| ECRV308_RS25330 () | 1581787..1581900 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| ECRV308_RS07850 () | 1581969..1582202 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| ECRV308_RS07855 () | 1582519..1583109 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| ECRV308_RS07860 () | 1583207..1583782 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| ECRV308_RS07865 () | 1583782..1584744 | - | 963 | WP_001027733.1 | phage tail protein | - |
| ECRV308_RS07870 () | 1584695..1585264 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| ECRV308_RS07875 () | 1585653..1585886 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| ECRV308_RS07880 () | 1585944..1586354 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| ECRV308_RS07885 () | 1586506..1586679 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| ECRV308_RS07890 () | 1586851..1587006 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| ECRV308_RS25335 () | 1587085..1587150 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| ECRV308_RS23525 () | 1587153..1587341 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| ECRV308_RS07895 () | 1587352..1587564 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| ECRV308_RS07900 () | 1587927..1588424 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| ECRV308_RS07905 () | 1588421..1588954 | - | 534 | WP_001092971.1 | lysozyme | - |
| ECRV308_RS07910 () | 1588951..1589262 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| ECRV308_RS07915 () | 1589267..1589482 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| ECRV308_RS07920 () | 1590236..1590451 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| ECRV308_RS07925 () | 1590752..1590964 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| ECRV308_RS25340 () | 1591019..1591108 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| ECRV308_RS07930 () | 1591386..1592138 | - | 753 | WP_001047135.1 | antitermination protein | - |
| ECRV308_RS07935 () | 1592152..1593201 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| ECRV308_RS07940 () | 1593203..1593481 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| ECRV308_RS07945 () | 1593548..1593799 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| ECRV308_RS07950 () | 1594016..1594171 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| ECRV308_RS07955 () | 1594243..1594530 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| ECRV308_RS07960 () | 1594530..1594769 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| ECRV308_RS23530 () | 1594794..1595099 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| ECRV308_RS07965 () | 1595302..1595634 | + | 333 | WP_001301033.1 | protein FlxA | - |
| ECRV308_RS22835 () | 1596071..1596220 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| ECRV308_RS07970 () | 1596255..1596533 | - | 279 | Protein_1521 | hypothetical protein | - |
| ECRV308_RS07975 () | 1596517..1596747 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| ECRV308_RS07980 () | 1596831..1597238 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| ECRV308_RS07985 () | 1597405..1597560 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| ECRV308_RS07990 () | 1597720..1597938 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| ECRV308_RS08000 () | 1598506..1598694 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| ECRV308_RS08005 () | 1598691..1598882 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| ECRV308_RS23545 () | 1598975..1599742 | + | 768 | Protein_1528 | exonuclease | - |
| ECRV308_RS08015 () | 1599739..1600434 | + | 696 | Protein_1529 | IS3 family transposase IS2 | Transposase |
| ECRV308_RS25350 () | 1600448..1601605 | + | 1158 | Protein_1530 | Putative defective protein IntQ ; Integrase | Integrase |
| ECRV308_RS24815 () | 1601625..1601735 | - | 111 | WP_001360138.1 | hypothetical protein | - |
| ECRV308_RS08025 () | 1601793..1602812 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| ECRV308_RS08030 () | 1602824..1604038 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| ECRV308_RS08035 () | 1604244..1604570 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| ECRV308_RS08040 () | 1604705..1605046 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| ECRV308_RS08045 () | 1605081..1605641 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| ECRV308_RS08050 () | 1605644..1606354 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| ECRV308_RS08055 () | 1606462..1606767 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| ECRV308_RS08060 () | 1606966..1609392 | + | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
| ECRV308_RS08065 () | 1609453..1611876 | + | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| ECRV308_RS08070 () | 1611887..1612504 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| ECRV308_RS08075 () | 1612506..1613360 | + | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit | - |
| ECRV308_RS08080 () | 1613403..1614017 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| ECRV308_RS08085 () | 1614176..1615468 | + | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| ECRV308_RS08090 () | 1615421..1616116 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| ECRV308_RS08095 () | 1616241..1617461 | - | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0 |