MGE detailed information

MGE type: Conjugative plasmid        MGE length: 165169 bp
Accession: NZ_KY887596        Location: 1..165169         Organism: Escherichia coli strain Ec158       Replicon: plasmid pEc158


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HTM98_RS00005 323..862 + 540 WP_001447712.1 conjugative transfer protein MobI(A/C) -
HTM98_RS00010 867..1154 + 288 WP_000127321.1 hypothetical protein -
HTM98_RS00015 1139..2239 + 1101 WP_000350011.1 RepB family plasmid replication initiator protein -
HTM98_RS00020 2585..2866 + 282 WP_001326182.1 hypothetical protein -
HTM98_RS00025 3276..3710 - 435 WP_000883925.1 hypothetical protein -
HTM98_RS00030 3728..4843 - 1116 WP_000946102.1 phosphoadenosine phosphosulfate reductase family protein -
HTM98_RS00035 5112..5720 + 609 WP_000849071.1 hypothetical protein -
HTM98_RS00040 5725..6246 + 522 WP_000393785.1 hypothetical protein -
HTM98_RS00045 6249..6770 + 522 WP_000805800.1 hypothetical protein -
HTM98_RS00050 6867..7340 + 474 WP_000057877.1 hypothetical protein -
HTM98_RS00055 7351..7644 + 294 WP_001370730.1 hypothetical protein -
HTM98_RS00060 7649..8503 + 855 WP_000539392.1 hypothetical protein -
HTM98_RS00065 8503..9462 + 960 WP_000829616.1 S49 family peptidase -
HTM98_RS00070 9478..10338 + 861 WP_000139698.1 DsbA family protein -
HTM98_RS00075 10372..10800 + 429 WP_000591074.1 hypothetical protein -
HTM98_RS00080 10857..11216 + 360 WP_000422768.1 hypothetical protein -
HTM98_RS00085 11216..11662 + 447 WP_000919345.1 Fe3+-siderophore ABC transporter permease -
HTM98_RS00090 11659..12177 + 519 WP_000210756.1 nitrite reductase -
HTM98_RS00095 12177..12407 + 231 WP_000972663.1 hypothetical protein -
HTM98_RS00100 12394..13251 + 858 WP_001167032.1 hypothetical protein -
HTM98_RS00105 13277..13465 + 189 WP_001270411.1 hypothetical protein -
HTM98_RS00110 13482..14009 + 528 WP_001236377.1 thermonuclease family protein -
HTM98_RS00115 14067..14339 + 273 WP_001043047.1 HU family DNA-binding protein -
HTM98_RS00120 14427..14720 + 294 WP_001239997.1 chromosome segregation protein ParM -
HTM98_RS00125 14747..15049 - 303 WP_000124640.1 XRE family transcriptional regulator Antitoxin Detail
HTM98_RS00130 15054..15404 - 351 WP_000270043.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin Detail
HTM98_RS00135 15567..16115 + 549 WP_001061574.1 transcriptional regulator -
HTM98_RS00140 16289..16456 + 168 WP_015059388.1 hypothetical protein -
HTM98_RS00145 16456..16650 + 195 WP_000343597.1 hypothetical protein -
HTM98_RS00150 16661..17032 + 372 WP_000516916.1 hypothetical protein -
HTM98_RS00155 17025..17495 + 471 WP_001281821.1 hypothetical protein -
HTM98_RS00160 17510..17845 - 336 WP_000683476.1 hypothetical protein -
HTM98_RS00165 17942..18430 + 489 WP_001273096.1 DUF1643 domain-containing protein -
HTM98_RS00170 18433..18930 + 498 WP_000062185.1 hypothetical protein -
HTM98_RS00175 19492..20424 + 933 WP_000434071.1 hypothetical protein -
HTM98_RS00180 20498..21961 + 1464 WP_001280522.1 AAA family ATPase -
HTM98_RS00185 22117..22446 + 330 WP_000277953.1 hypothetical protein -
HTM98_RS00190 22451..22843 + 393 WP_000018404.1 hypothetical protein -
HTM98_RS00195 22892..23086 + 195 WP_000757530.1 DUF2997 domain-containing protein -
HTM98_RS00200 23080..24264 + 1185 WP_000245298.1 hypothetical protein -
HTM98_RS00205 24276..24623 + 348 WP_000039129.1 hypothetical protein -
HTM98_RS00210 24620..25048 + 429 WP_000988987.1 hypothetical protein -
HTM98_RS00215 25041..25604 + 564 WP_000004673.1 hypothetical protein -
HTM98_RS00220 25616..26104 + 489 WP_001256127.1 hypothetical protein -
HTM98_RS00225 26043..26360 + 318 WP_011742556.1 Type IV secretion system protein virB8 VF
HTM98_RS00230 26371..27255 + 885 WP_000735066.1 Type IV secretion system protein virB9 VF
HTM98_RS00235 27255..28415 + 1161 WP_000101710.1 Protein virB10 VF
HTM98_RS00240 28457..29452 + 996 WP_000128596.1 Type IV secretion system protein VirB11 VF
HTM98_RS00245 29452..29985 + 534 WP_000792636.1 Phospholipase D VF
HTM98_RS00250 30159..30287 - 129 WP_002210551.1 hypothetical protein -
HTM98_RS00255 30713..30892 + 180 Protein_50 helix-turn-helix domain-containing protein -
HTM98_RS00260 30957..31271 + 315 Protein_51 IS6 family transposase IS15DI Transposase
HTM98_RS00265 31335..32039 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
HTM98_RS00270 31985..32344 - 360 WP_048263826.1 hypothetical protein -
HTM98_RS00275 32671..33408 + 738 WP_001366550.1 Tn3 family transposase TnpR_TnEc1 Transposase
HTM98_RS00280 33405..33629 + 225 WP_000743213.1 hypothetical protein -
HTM98_RS00285 33728..34039 + 312 WP_000338945.1 hypothetical protein -
HTM98_RS00290 34213..34998 + 786 WP_001151304.1 Sporulation initiation inhibitor protein Soj VF
HTM98_RS00295 35002..36183 + 1182 WP_001207227.1 KorB domain-containing protein -
HTM98_RS00300 36232..36504 + 273 WP_000703827.1 helix-turn-helix domain-containing protein -
HTM98_RS00305 36557..37192 - 636 WP_000074431.1 N-6 DNA methylase -
HTM98_RS00310 37284..37427 - 144 WP_000939033.1 hypothetical protein -
HTM98_RS00315 37746..38123 + 378 WP_001125905.1 hypothetical protein -
HTM98_RS00320 38116..38397 + 282 WP_000044824.1 hypothetical protein -
HTM98_RS00325 38372..39046 + 675 WP_000344151.1 thymidylate kinase -
HTM98_RS00330 39039..39545 + 507 WP_000566600.1 hypothetical protein -
HTM98_RS00335 39551..39862 + 312 WP_002210541.1 hypothetical protein -
HTM98_RS00340 39871..40371 + 501 WP_000647189.1 hypothetical protein -
HTM98_RS00345 40375..41802 + 1428 WP_000936896.1 DNA cytosine methyltransferase -
HTM98_RS00350 41802..42458 + 657 WP_000268551.1 hypothetical protein -
HTM98_RS00355 42664..42882 + 219 WP_000362482.1 hypothetical protein -
HTM98_RS00360 42976..43593 + 618 WP_000464631.1 hypothetical protein -
HTM98_RS00365 43826..44104 + 279 WP_014386427.1 hypothetical protein -
HTM98_RS00370 44196..44684 - 489 WP_000468105.1 hypothetical protein -
HTM98_RS00375 44699..46891 - 2193 WP_000366822.1 DNA topoisomerase 3 -
HTM98_RS00380 46891..47124 - 234 WP_001191892.1 hypothetical protein -
HTM98_RS00385 47106..47723 - 618 WP_001249396.1 hypothetical protein -
HTM98_RS00390 47891..50869 + 2979 WP_001337757.1 hypothetical protein Relaxase
HTM98_RS00395 50866..52731 + 1866 WP_000178856.1 conjugative transfer system coupling protein TraD -
HTM98_RS00400 52742..53326 + 585 WP_000332866.1 hypothetical protein -
HTM98_RS00405 53283..53912 + 630 WP_000743450.1 DUF4400 domain-containing protein -
HTM98_RS00410 53922..54368 + 447 WP_000122506.1 hypothetical protein -
HTM98_RS00415 54378..54755 + 378 WP_000869261.1 hypothetical protein -
HTM98_RS00420 54755..55417 + 663 WP_001231463.1 hypothetical protein -
HTM98_RS00425 55598..55741 + 144 WP_001275801.1 hypothetical protein -
HTM98_RS00430 55753..56118 + 366 WP_001052531.1 hypothetical protein -
HTM98_RS00435 56263..56544 + 282 WP_000805625.1 type IV conjugative transfer system protein TraL -
HTM98_RS00440 56541..57167 + 627 WP_001049716.1 TraE/TraK family type IV conjugative transfer system protein -
HTM98_RS00445 57151..58068 + 918 WP_000794249.1 type-F conjugative transfer system secretin TraK -
HTM98_RS00450 58068..59381 + 1314 WP_024131605.1 TraB/VirB10 family protein -
HTM98_RS00455 59378..59956 + 579 WP_000793435.1 type IV conjugative transfer system lipoprotein TraV -
HTM98_RS00460 59960..60352 + 393 WP_000479535.1 TraA family conjugative transfer protein -
HTM98_RS00465 60553..66084 + 5532 WP_000606833.1 Ig-like domain-containing protein -
HTM98_RS00470 66233..66940 + 708 WP_001259347.1 DsbC family protein -
HTM98_RS00475 66937..69384 + 2448 WP_024945386.1 type IV secretion system protein TraC -
HTM98_RS00480 69399..69716 + 318 WP_000351984.1 hypothetical protein -
HTM98_RS00485 69713..70243 + 531 WP_001010738.1 S26 family signal peptidase -
HTM98_RS00490 70206..71471 + 1266 WP_000621288.1 TrbC family F-type conjugative pilus assembly protein -
HTM98_RS00495 71468..72139 + 672 WP_001337754.1 EAL domain-containing protein -
HTM98_RS00500 72139..73143 + 1005 WP_043940352.1 TraU family protein -
HTM98_RS00505 73259..76057 + 2799 WP_001256487.1 conjugal transfer mating pair stabilization protein TraN -
HTM98_RS00510 76096..76956 - 861 WP_000709517.1 hypothetical protein -
HTM98_RS00515 77079..77720 - 642 WP_000796664.1 hypothetical protein -
HTM98_RS00520 78015..78335 + 321 WP_000547566.1 hypothetical protein -
HTM98_RS00525 78639..78824 + 186 WP_001186917.1 hypothetical protein -
HTM98_RS00530 79044..80012 + 969 WP_000085162.1 CbbQ/NirQ/NorQ C-terminal domain-containing protein -
HTM98_RS00535 80023..80931 + 909 WP_000739139.1 hypothetical protein -
HTM98_RS00540 80992..81522 + 531 WP_000987165.1 single-stranded DNA-binding protein -
HTM98_RS00545 81617..82606 + 990 WP_001282585.1 phage recombination protein Bet -
HTM98_RS00550 82669..83679 + 1011 WP_000706865.1 YqaJ viral recombinase family protein -
HTM98_RS00555 83879..85156 + 1278 WP_000170086.1 DUF3150 domain-containing protein -
HTM98_RS00560 85241..87037 + 1797 WP_000039318.1 VWA domain-containing protein -
HTM98_RS00565 87099..87434 + 336 WP_001071288.1 hypothetical protein -
HTM98_RS00570 87699..88238 + 540 WP_000018872.1 hypothetical protein -
HTM98_RS00575 88329..88829 + 501 WP_000793769.1 hypothetical protein -
HTM98_RS00580 88903..89787 + 885 WP_000477209.1 hypothetical protein -
HTM98_RS00585 89853..90077 + 225 WP_001102700.1 class I ribonucleotide reductase maintenance protein YfaE -
HTM98_RS00590 90139..90528 + 390 WP_000026577.1 hypothetical protein -
HTM98_RS00595 90494..90970 + 477 WP_015058949.1 hypothetical protein -
HTM98_RS00600 91048..91290 - 243 WP_002210529.1 hypothetical protein -
HTM98_RS00605 91308..91499 + 192 WP_000651508.1 hypothetical protein -
HTM98_RS00610 91568..91921 + 354 WP_000994741.1 hypothetical protein -
HTM98_RS00615 92113..92457 + 345 WP_000209093.1 hypothetical protein -
HTM98_RS00620 92535..92837 + 303 WP_000410925.1 hypothetical protein -
HTM98_RS00625 92915..94540 + 1626 WP_000201432.1 DNA cytosine methyltransferase -
HTM98_RS00630 94601..95032 + 432 WP_000687894.1 hypothetical protein -
HTM98_RS00635 95106..95660 + 555 WP_001093868.1 hypothetical protein -
HTM98_RS00640 95893..96279 + 387 WP_000042274.1 hypothetical protein -
HTM98_RS00645 96367..98820 + 2454 WP_001187970.1 phosphoadenosine phosphosulfate reductase -
HTM98_RS00650 99022..99225 + 204 WP_000050848.1 hypothetical protein -
HTM98_RS00655 99297..99902 + 606 WP_000071870.1 5'-deoxynucleotidase -
HTM98_RS00660 99895..100164 + 270 WP_000184110.1 hypothetical protein -
HTM98_RS00665 100178..100396 + 219 WP_000260293.1 hypothetical protein -
HTM98_RS00670 100470..101027 + 558 WP_000064431.1 pyruvate dehydrogenase -
HTM98_RS00675 101102..101953 + 852 WP_000595210.1 hypothetical protein -
HTM98_RS00680 102411..102797 + 387 WP_001077335.1 hypothetical protein -
HTM98_RS00685 102975..104702 + 1728 WP_000122923.1 toprim domain-containing protein -
HTM98_RS00690 104689..104967 + 279 WP_000268337.1 hypothetical protein -
HTM98_RS00695 105040..105279 + 240 WP_000714162.1 permease -
HTM98_RS00700 105289..105405 + 117 WP_000338626.1 hypothetical protein -
HTM98_RS00705 105526..105900 + 375 WP_000868821.1 hypothetical protein -
HTM98_RS00710 106014..106739 + 726 WP_000988732.1 hypothetical protein -
HTM98_RS00715 106980..110309 + 3330 Protein_142 DUF6531 domain-containing protein -
HTM98_RS00720 110586..111590 - 1005 WP_000427620.1 IS110 family transposase IS4321 Transposase
HTM98_RS00725 111669..114641 - 2973 WP_099595303.1 Tn3 family transposase TnpA_TnAs3 Transposase
HTM98_RS00730 114644..115201 - 558 WP_001162012.1 Tn3 family transposase TnpR_TnAs2 Transposase
HTM98_RS00735 115507..116520 - 1014 WP_002075255.1 IS91 family transposase ISAzo26 Transposase
HTM98_RS00740 116673..117413 + 741 WP_015060105.1 Metallo-beta-lactamase type 2 ARG
HTM98_RS00745 117645..117977 + 333 WP_015063357.1 quaternary ammonium compound efflux SMR transporter QacG2 -
HTM98_RS00750 118104..118658 + 555 WP_003159191.1 aminoglycoside N-acetyltransferase AAC(6')-Ib4 -
HTM98_RS00755 118753..119385 + 633 WP_000186237.1 Chloramphenicol acetyltransferase VF
HTM98_RS00760 119542..119889 + 348 WP_000679427.1 Multidrug transporter EmrE ARG
HTM98_RS00765 119883..120722 + 840 WP_000259031.1 Dihydropteroate synthase ARG
HTM98_RS00770 120850..121122 + 273 WP_004883563.1 hypothetical protein -
HTM98_RS00775 121304..122308 - 1005 WP_000427620.1 IS110 family transposase IS4321 Transposase
HTM98_RS00780 122536..123741 + 1206 WP_000184001.1 chromate efflux transporter -
HTM98_RS00785 123752..124057 + 306 WP_000130000.1 hypothetical protein Relaxase
HTM98_RS00790 124101..124166 + 66 Protein_157 EAL domain-containing protein -
HTM98_RS00795 124284..125048 + 765 WP_001389365.1 IS6 family transposase IS6100 Transposase
HTM98_RS00800 125541..126125 - 585 WP_001137892.1 macrolide-binding transcriptional repressor MphR(A) -
HTM98_RS00805 126125..127363 - 1239 WP_000004159.1 macrolide resistance MFS transporter Mrx(A) -
HTM98_RS00810 127360..128265 - 906 WP_000219391.1 hypothetical protein ARG
HTM98_RS00815 128387..129091 - 705 WP_001067855.1 IS6 family transposase IS26 Transposase
HTM98_RS00820 129324..130184 + 861 WP_000557454.1 SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD ARG
HTM98_RS00825 130197..130739 + 543 WP_000587837.1 AAA family ATPase -
HTM98_RS00830 131221..131412 - 192 WP_000951934.1 hypothetical protein -
HTM98_RS00835 131436..131663 + 228 WP_000248278.1 hypothetical protein -
HTM98_RS00840 131714..132850 + 1137 WP_000080861.1 DUF3883 domain-containing protein -
HTM98_RS00845 132965..134335 + 1371 WP_000971921.1 IS1182 family transposase ISCfr1 Transposase
HTM98_RS00850 134962..135849 + 888 Protein_169 IS91 family transposase ISVsa3 Transposase
HTM98_RS00855 136309..136704 + 396 WP_099595305.1 hypothetical protein -
HTM98_RS00860 136701..137138 + 438 WP_125551038.1 hypothetical protein -
HTM98_RS00865 137135..137647 + 513 WP_099595307.1 Dihydrofolate reductase ARG
HTM98_RS00870 137763..138005 + 243 Protein_173 SMR family transporter -
HTM98_RS00875 137999..138838 + 840 WP_000259031.1 Dihydropteroate synthase ARG
HTM98_RS00880 138966..139466 + 501 WP_000376626.1 GNAT family N-acetyltransferase -
HTM98_RS00885 139572..140024 - 453 Protein_176 TniB family NTP-binding protein -
HTM98_RS00890 140027..141706 - 1680 WP_021529834.1 DDE-type integrase/transposase/recombinase -
HTM98_RS00895 141781..142449 - 669 WP_001300294.1 putative signaling protein VF
HTM98_RS00900 142485..142721 - 237 WP_000993386.1 broad-spectrum mercury transporter MerE -
HTM98_RS00905 142718..143080 - 363 WP_001277456.1 mercury resistance co-regulator MerD -
HTM98_RS00910 143098..143595 - 498 Protein_181 mercuric reductase -
HTM98_RS00915 143756..144616 - 861 WP_000027057.1 Beta-lactamase TEM ARG
HTM98_RS00920 144799..145356 - 558 WP_021529835.1 Tn3 family transposase TnpR_Tn3 Transposase
HTM98_RS00925 145520..148525 + 3006 WP_001143760.1 Tn3 family transposase TnpA_Tn3 Transposase
HTM98_RS00930 148560..149228 + 669 Protein_185 3'-5' exonuclease -
HTM98_RS00935 149225..149716 + 492 WP_000139717.1 hypothetical protein -
HTM98_RS00940 150043..150918 + 876 WP_001097010.1 DNA replication terminus site-binding protein -
HTM98_RS00945 151080..152120 + 1041 WP_000101568.1 DNA-binding protein -
HTM98_RS00950 152407..153918 + 1512 WP_000811656.1 UvrD-helicase domain-containing protein -
HTM98_RS00955 154029..155069 + 1041 WP_001326396.1 conjugal transfer protein TraF -
HTM98_RS00960 155071..156504 + 1434 WP_000256129.1 conjugal transfer protein TraH -
HTM98_RS00965 156517..160131 + 3615 WP_000534551.1 conjugal transfer protein TraG N-terminal domain-containing protein -
HTM98_RS00970 160169..160531 - 363 WP_000683483.1 hypothetical protein -
HTM98_RS00975 161247..161519 + 273 WP_000356489.1 helix-turn-helix domain-containing protein -
HTM98_RS00980 161519..162052 + 534 WP_000790610.1 transglycosylase SLT domain-containing protein -
HTM98_RS00985 162063..162671 + 609 WP_000891157.1 hypothetical protein -
HTM98_RS00990 162668..163219 + 552 WP_001020646.1 FlhC family transcriptional regulator -
HTM98_RS00995 163279..163698 - 420 WP_000651490.1 H-NS family nucleoid-associated regulatory protein -
HTM98_RS01000 163700..163993 - 294 WP_000919078.1 hypothetical protein -
HTM98_RS01005 164010..164993 - 984 WP_000077458.1 ParM/StbA family protein -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance
Escherichia coli strain CRE1540 Conjugative plasmid TA71638 NZ_CP019053 1..155802 0.01
Escherichia coli strain WF5-5-T2 Conjugative plasmid TA150580 NZ_CP049113 1..183610 0.007
Escherichia coli strain KCJ3K291 Conjugative plasmid TA159690 NZ_CP054408 1..147764 0.009
Escherichia coli strain EC8 Conjugative plasmid TA171743 NZ_CP060954 1..168756 0.009
Escherichia coli strain TCM3e1 Conjugative plasmid TA185097 NZ_CP066808 1..191962 0.01