MGE detailed information
MGE type: Prophage MGE length: 35438 bp
Accession: NZ_CP128218 Location: 1253353..1288790 Organism: Escherichia coli strain TG1 Replicon: chromosome
Accession: NZ_CP128218 Location: 1253353..1288790 Organism: Escherichia coli strain TG1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QSI84_RS06155 (1249868) | 1249868..1250614 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| QSI84_RS06160 (1250703) | 1250703..1251389 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| QSI84_RS06165 (1251566) | 1251566..1251769 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| QSI84_RS06170 (1251804) | 1251804..1253264 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| QSI84_RS06175 (1253353) | 1253353..1254720 | - | 1368 | Protein_1205 | MHS family MFS transporter | - |
| QSI84_RS06180 (1255241) | 1255241..1255354 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| QSI84_RS06185 (1255423) | 1255423..1255488 | + | 66 | Protein_1207 | cold shock protein YdfK | - |
| QSI84_RS06190 (1255555) | 1255555..1256535 | + | 981 | WP_000019403.1 | IS5 family transposase IS5D | Transposase |
| QSI84_RS06195 (1256682) | 1256682..1256855 | + | 174 | Protein_1209 | cold shock protein YdfK | - |
| QSI84_RS06200 (1257172) | 1257172..1257762 | + | 591 | WP_000078178.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| QSI84_RS06205 (1257860) | 1257860..1258435 | - | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| QSI84_RS06210 (1258435) | 1258435..1259397 | - | 963 | WP_001027733.1 | phage tail protein | - |
| QSI84_RS06215 (1259348) | 1259348..1259917 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| QSI84_RS06220 (1260306) | 1260306..1260539 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| QSI84_RS06225 (1260597) | 1260597..1261007 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| QSI84_RS06230 (1261159) | 1261159..1261332 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| QSI84_RS06235 (1261504) | 1261504..1261659 | - | 156 | WP_001309517.1 | protein YnfN | - |
| QSI84_RS06240 (1261738) | 1261738..1261803 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| QSI84_RS06245 (1261806) | 1261806..1261994 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| QSI84_RS06250 (1262005) | 1262005..1262217 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| QSI84_RS06255 (1262580) | 1262580..1263077 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| QSI84_RS06260 (1263074) | 1263074..1263607 | - | 534 | WP_001092971.1 | lysozyme | - |
| QSI84_RS06265 (1263604) | 1263604..1263915 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| QSI84_RS06270 (1263920) | 1263920..1264135 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| QSI84_RS06275 (1264355) | 1264355..1264525 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| QSI84_RS06280 (1264889) | 1264889..1265104 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| QSI84_RS06285 (1265405) | 1265405..1265617 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| QSI84_RS06290 (1265672) | 1265672..1265761 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| QSI84_RS06295 (1266039) | 1266039..1266791 | - | 753 | WP_001047135.1 | antitermination protein | - |
| QSI84_RS06300 (1266805) | 1266805..1267854 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| QSI84_RS06305 (1267856) | 1267856..1268134 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| QSI84_RS06310 (1268201) | 1268201..1268452 | - | 252 | WP_000980994.1 | protein Rem | - |
| QSI84_RS06315 (1268669) | 1268669..1268824 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| QSI84_RS06320 (1268896) | 1268896..1269183 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| QSI84_RS06325 (1269183) | 1269183..1269422 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| QSI84_RS06330 (1269447) | 1269447..1269752 | + | 306 | WP_001326990.1 | protein YdfV | - |
| QSI84_RS06335 (1269955) | 1269955..1270287 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| QSI84_RS06340 (1270724) | 1270724..1270873 | - | 150 | WP_011443592.1 | protein YdfW | - |
| QSI84_RS06345 (1270908) | 1270908..1271186 | - | 279 | Protein_1239 | protein YdfX | - |
| QSI84_RS06350 (1271170) | 1271170..1271400 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| QSI84_RS06355 (1271484) | 1271484..1271891 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| QSI84_RS06360 (1272058) | 1272058..1272213 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| QSI84_RS06365 (1272215) | 1272215..1272343 | + | 129 | WP_000344964.1 | protein YdfB | - |
| QSI84_RS06370 (1272373) | 1272373..1272591 | + | 219 | WP_001171942.1 | protein YdfC | - |
| QSI84_RS06375 (1273159) | 1273159..1273347 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| QSI84_RS06380 (1273344) | 1273344..1273535 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| QSI84_RS06385 (1273628) | 1273628..1274395 | + | 768 | Protein_1247 | exonuclease | - |
| QSI84_RS06390 (1274392) | 1274392..1275087 | + | 696 | Protein_1248 | IS3 family transposase IS2 | Transposase |
| QSI84_RS06395 (1275101) | 1275101..1276258 | + | 1158 | Protein_1249 | Putative defective protein IntQ ; Integrase | Integrase |
| QSI84_RS06400 (1276446) | 1276446..1277465 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| QSI84_RS06405 (1277477) | 1277477..1278691 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| QSI84_RS06410 (1278897) | 1278897..1279223 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| QSI84_RS06415 (1279358) | 1279358..1279699 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| QSI84_RS06420 (1279734) | 1279734..1280294 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| QSI84_RS06425 (1280297) | 1280297..1281007 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| QSI84_RS06430 (1281115) | 1281115..1281420 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| QSI84_RS06435 (1281619) | 1281619..1283235 | + | 1617 | Protein_1257 | molybdopterin-dependent oxidoreductase | - |
| QSI84_RS06445 (1284001) | 1284001..1284822 | + | 822 | Protein_1259 | molybdopterin dinucleotide binding domain-containing protein | - |
| QSI84_RS06450 (1284883) | 1284883..1287306 | + | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| QSI84_RS06455 (1287317) | 1287317..1287934 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| QSI84_RS06460 (1287936) | 1287936..1288790 | + | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| QSI84_RS06465 (1288833) | 1288833..1289447 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| QSI84_RS06470 (1289606) | 1289606..1290898 | + | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| QSI84_RS06475 (1290851) | 1290851..1291546 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| QSI84_RS06480 (1291671) | 1291671..1292891 | - | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.002 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.002 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.002 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.002 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.002 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.002 |