MGE detailed information
MGE type: Conjugative plasmid MGE length: 139741 bp
Accession: NZ_CP122633 Location: 1..139741 Organism: Escherichia coli strain ETEC4088 Replicon: plasmid unnamed4
Accession: NZ_CP122633 Location: 1..139741 Organism: Escherichia coli strain ETEC4088 Replicon: plasmid unnamed4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDW58_RS24840 (1) | 1..3903 | + | 3903 | WP_001045657.1 | Serine protease EspP | VF |
| QDW58_RS24845 (4213) | 4213..4515 | + | 303 | Protein_1 | IS3 family transposase ISEc31 | Transposase |
| QDW58_RS24850 (4528) | 4528..5679 | - | 1152 | WP_001254932.1 | IS30 family transposase IS30D | Transposase |
| QDW58_RS24855 (5747) | 5747..6004 | - | 258 | Protein_3 | IS3 family transposase IS911 | Transposase |
| QDW58_RS24860 (6283) | 6283..6477 | - | 195 | Protein_4 | IS91 family transposase | - |
| QDW58_RS24865 (6645) | 6645..10778 | + | 4134 | WP_001080138.1 | Hemoglobin-binding protease hbp autotransporter | VF |
| QDW58_RS24870 (10890) | 10890..11587 | + | 698 | WP_094096600.1 | IS1-like element IS1A family transposase | - |
| QDW58_RS24875 (11612) | 11612..12634 | - | 1023 | WP_000361402.1 | helicase UvrD | - |
| QDW58_RS24880 (12619) | 12619..14184 | - | 1566 | WP_001128474.1 | AAA family ATPase | - |
| QDW58_RS24885 (14259) | 14259..14675 | - | 417 | WP_001034044.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| QDW58_RS24890 (14672) | 14672..14902 | - | 231 | WP_001261286.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| QDW58_RS24895 (15506) | 15506..15856 | + | 351 | WP_000493379.1 | hypothetical protein | - |
| QDW58_RS24900 (15900) | 15900..16589 | + | 690 | WP_000796228.1 | hypothetical protein | - |
| QDW58_RS24905 (16586) | 16586..17377 | + | 792 | WP_000016494.1 | site-specific integrase | - |
| QDW58_RS24910 (17555) | 17555..17908 | + | 354 | WP_000864812.1 | colicin M immunity protein | - |
| QDW58_RS24915 (17958) | 17958..18773 | - | 816 | WP_001312845.1 | lipid II-degrading bacteriocin colicin M | - |
| QDW58_RS24920 (19017) | 19017..19544 | + | 528 | WP_000203272.1 | colicin B immunity protein | - |
| QDW58_RS24925 (19562) | 19562..19729 | - | 168 | Protein_17 | colicin-B | - |
| QDW58_RS24930 (19902) | 19902..20105 | + | 204 | Protein_18 | hypothetical protein | - |
| QDW58_RS24935 (20729) | 20729..21714 | - | 986 | Protein_19 | IS4 family transposase IS186B | Transposase |
| QDW58_RS24940 (21715) | 21715..22281 | - | 567 | Protein_20 | IS4 family transposase IS186B | Transposase |
| QDW58_RS24945 (22274) | 22274..23548 | - | 1275 | WP_000489607.1 | HlyD family secretion protein | - |
| QDW58_RS24955 (25495) | 25495..25764 | + | 270 | WP_000079941.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| QDW58_RS24960 (25764) | 25764..26042 | + | 279 | WP_097309154.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| QDW58_RS24965 (26088) | 26088..26936 | + | 849 | WP_001058005.1 | 3'-5' exonuclease | - |
| QDW58_RS24970 (27053) | 27053..27535 | + | 483 | WP_001311056.1 | hypothetical protein | - |
| QDW58_RS24975 (27837) | 27837..28184 | + | 348 | WP_000142437.1 | DUF6404 family protein | - |
| QDW58_RS24980 (28262) | 28262..28562 | - | 301 | Protein_28 | hypothetical protein | - |
| QDW58_RS24985 (28743) | 28743..29684 | + | 942 | WP_263882618.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| QDW58_RS24990 (29644) | 29644..29778 | + | 135 | WP_249531455.1 | hypothetical protein | - |
| QDW58_RS24995 (30632) | 30632..32809 | + | 2178 | WP_001222186.1 | Vitamin B12 transporter BtuB | VF |
| QDW58_RS25000 (32854) | 32854..33810 | - | 957 | WP_000271276.1 | hypothetical protein | VF |
| QDW58_RS25005 (33895) | 33895..35124 | - | 1230 | WP_000933675.1 | hypothetical protein | VF |
| QDW58_RS25010 (35228) | 35228..38887 | - | 3660 | WP_001111199.1 | Multidrug efflux ATP-binding/permease protein | VF |
| QDW58_RS25015 (39027) | 39027..40142 | - | 1116 | WP_001298145.1 | hypothetical protein | VF |
| QDW58_RS25020 (41453) | 41453..42477 | - | 1025 | Protein_36 | integrase core domain-containing protein | - |
| QDW58_RS25025 (43031) | 43031..43230 | + | 200 | Protein_37 | lysis protein | - |
| QDW58_RS25030 (43288) | 43288..43581 | - | 294 | WP_000738422.1 | increased serum survival lipoprotein Iss | - |
| QDW58_RS25035 (44208) | 44208..45436 | + | 1229 | WP_162858268.1 | IS3 family transposase IS2 | Transposase |
| QDW58_RS25040 (46660) | 46660..47853 | + | 1194 | WP_000450494.1 | GTP-binding protein | - |
| QDW58_RS25045 (48031) | 48031..48180 | + | 150 | Protein_41 | IS3 family transposase IS2 | Transposase |
| QDW58_RS25050 (48490) | 48490..49879 | + | 1390 | Protein_42 | ISNCY family transposase ISKpn21 | Transposase |
| QDW58_RS25055 (50114) | 50114..51054 | + | 941 | Protein_43 | hypothetical protein | - |
| QDW58_RS25060 (51183) | 51183..51377 | - | 195 | Protein_44 | IS200-IS605 family transposase IS200C | Transposase |
| QDW58_RS25065 (51851) | 51851..53221 | - | 1371 | WP_001312828.1 | efflux transporter outer membrane subunit | - |
| QDW58_RS25070 (53225) | 53225..55165 | - | 1941 | WP_000733252.1 | Macrolide export ATP-binding/permease protein MacB | VF |
| QDW58_RS25075 (55162) | 55162..56349 | - | 1188 | WP_000928804.1 | efflux RND transporter periplasmic adaptor subunit | - |
| QDW58_RS25080 (56944) | 56944..57294 | - | 351 | Protein_48 | IS3 family transposase | - |
| QDW58_RS25085 (57993) | 57993..59501 | + | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| QDW58_RS25090 (59600) | 59600..59925 | + | 326 | Protein_50 | IS3 family transposase ISLad1 | Transposase |
| QDW58_RS25095 (60073) | 60073..60552 | - | 480 | Protein_51 | IS3 family transposase IS629 | Transposase |
| QDW58_RS25100 (60636) | 60636..62144 | - | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| QDW58_RS25105 (62817) | 62817..63556 | - | 740 | Protein_53 | IS3 family transposase IS629 | Transposase |
| QDW58_RS25110 (63695) | 63695..63874 | + | 180 | Protein_54 | integrase core domain-containing protein | - |
| QDW58_RS25115 (64678) | 64678..65067 | - | 390 | WP_001332050.1 | IS110 family transposase ISEc20 | Transposase |
| QDW58_RS25120 (65171) | 65171..66124 | + | 954 | WP_000280980.1 | Protease 7 | VF |
| QDW58_RS25125 (66557) | 66557..67666 | + | 1110 | WP_098723319.1 | SDR family oxidoreductase | - |
| QDW58_RS25130 (67735) | 67735..68637 | + | 903 | WP_001312822.1 | hypothetical protein | VF |
| QDW58_RS25135 (69011) | 69011..69199 | + | 189 | WP_001332052.1 | hypothetical protein | - |
| QDW58_RS25140 (69320) | 69320..70060 | + | 741 | WP_001066953.1 | tyrosine-type recombinase/integrase | - |
| QDW58_RS25145 (70345) | 70345..71322 | - | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| QDW58_RS25150 (72068) | 72068..72391 | + | 324 | Protein_62 | IS21 family transposase IS21 | Transposase |
| QDW58_RS25155 (72393) | 72393..72497 | + | 105 | Protein_63 | AAA family ATPase | - |
| QDW58_RS25160 (72558) | 72558..73071 | + | 514 | Protein_64 | DUF4113 domain-containing protein | - |
| QDW58_RS25170 (74304) | 74304..75218 | + | 915 | WP_000949004.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| QDW58_RS25175 (75218) | 75218..76045 | + | 828 | WP_000983710.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| QDW58_RS25180 (76042) | 76042..76899 | + | 858 | WP_000992806.1 | Manganese transport system membrane protein MntB | ARG |
| QDW58_RS25185 (76896) | 76896..77753 | + | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| QDW58_RS25190 (77987) | 77987..78244 | - | 258 | Protein_70 | Tn3 family transposase | - |
| QDW58_RS25195 (78242) | 78242..78655 | + | 414 | Protein_71 | phosphopyruvate hydratase | - |
| QDW58_RS25200 (78996) | 78996..79376 | + | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| QDW58_RS25205 (79756) | 79756..80949 | - | 1194 | WP_000095526.1 | MFS transporter | - |
| QDW58_RS25210 (81085) | 81085..82809 | + | 1725 | WP_000602863.1 | hypothetical protein | VF |
| QDW58_RS25215 (82810) | 82810..83757 | + | 948 | WP_000011907.1 | hypothetical protein | VF |
| QDW58_RS25220 (83757) | 83757..85499 | + | 1743 | WP_001015721.1 | hypothetical protein | VF |
| QDW58_RS25225 (85496) | 85496..86829 | + | 1334 | Protein_77 | Ferredoxin--NADP reductase | VF |
| QDW58_RS25230 (86855) | 86855..89056 | + | 2202 | WP_000973517.1 | Ferric aerobactin receptor | VF |
| QDW58_RS25235 (89581) | 89581..90278 | + | 698 | WP_224158172.1 | IS1-like element IS1A family transposase | - |
| QDW58_RS25240 (90578) | 90578..91744 | + | 1167 | WP_001238646.1 | Sporulation initiation inhibitor protein Soj | VF |
| QDW58_RS25245 (91744) | 91744..92715 | + | 972 | WP_000817028.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| QDW58_RS25250 (93352) | 93352..93521 | + | 170 | Protein_82 | hypothetical protein | - |
| QDW58_RS25255 (93518) | 93518..93865 | + | 348 | WP_001350917.1 | hypothetical protein | - |
| QDW58_RS25260 (93934) | 93934..94509 | + | 576 | WP_000343071.1 | hypothetical protein | - |
| QDW58_RS25265 (94522) | 94522..94734 | + | 213 | WP_000092896.1 | hypothetical protein | - |
| QDW58_RS25270 (94995) | 94995..95966 | - | 972 | WP_000082155.1 | IS110 family transposase ISEc32 | Transposase |
| QDW58_RS25275 (96368) | 96368..96793 | + | 426 | WP_001198922.1 | antirestriction protein | - |
| QDW58_RS25280 (96793) | 96793..97254 | + | 462 | WP_042007484.1 | DUF1380 family protein | - |
| QDW58_RS25285 (97254) | 97254..97436 | + | 183 | WP_001027505.1 | hypothetical protein | - |
| QDW58_RS25290 (97660) | 97660..97913 | - | 254 | Protein_90 | hypothetical protein | - |
| QDW58_RS25295 (98430) | 98430..98660 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| QDW58_RS25300 (98712) | 98712..100073 | + | 1362 | WP_000170680.1 | DUF3560 domain-containing protein | - |
| QDW58_RS25305 (100121) | 100121..100684 | + | 564 | WP_001332335.1 | class I SAM-dependent methyltransferase | - |
| QDW58_RS25310 (100770) | 100770..101189 | - | 420 | WP_015056142.1 | hypothetical protein | - |
| QDW58_RS25315 (101490) | 101490..101987 | + | 498 | Protein_95 | single-stranded DNA-binding protein | - |
| QDW58_RS25320 (102085) | 102085..102318 | + | 234 | WP_000005988.1 | DUF905 family protein | - |
| QDW58_RS25325 (102382) | 102382..104340 | + | 1959 | WP_282834335.1 | ParB/RepB/Spo0J family partition protein | - |
| QDW58_RS25330 (104395) | 104395..104829 | + | 435 | WP_000845922.1 | conjugation system SOS inhibitor PsiB | - |
| QDW58_RS25335 (104826) | 104826..105612 | + | 787 | Protein_99 | plasmid SOS inhibition protein A | - |
| - (105557) | 105557..105768 | + | 212 | NuclAT_0 | - | Antitoxin Detail |
| - (105557) | 105557..105768 | + | 212 | NuclAT_0 | - | Antitoxin Detail |
| - (105557) | 105557..105768 | + | 212 | NuclAT_0 | - | Antitoxin Detail |
| - (105557) | 105557..105768 | + | 212 | NuclAT_0 | - | Antitoxin Detail |
| QDW58_RS25340 (105802) | 105802..105915 | + | 114 | Protein_100 | DUF5431 family protein | - |
| QDW58_RS25345 (105860) | 105860..105982 | + | 123 | WP_223195199.1 | Hok/Gef family protein | Toxin Detail |
| QDW58_RS25350 (106283) | 106283..106580 | - | 298 | Protein_102 | hypothetical protein | - |
| QDW58_RS25355 (106881) | 106881..107168 | + | 288 | WP_000107520.1 | hypothetical protein | - |
| QDW58_RS25360 (107287) | 107287..108108 | + | 822 | WP_001234468.1 | DUF932 domain-containing protein | - |
| QDW58_RS25365 (108404) | 108404..108913 | - | 510 | WP_249820740.1 | hypothetical protein | VF |
| QDW58_RS25370 (109329) | 109329..109712 | + | 384 | WP_098723228.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| QDW58_RS25375 (109899) | 109899..110588 | + | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| QDW58_RS25380 (110681) | 110681..111082 | + | 402 | WP_001369361.1 | conjugal transfer relaxosome DNA-bindin protein TraY | - |
| QDW58_RS25385 (111115) | 111115..111480 | + | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| QDW58_RS25390 (111495) | 111495..111806 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| QDW58_RS25395 (111828) | 111828..112394 | + | 567 | WP_000399785.1 | type IV conjugative transfer system protein TraE | - |
| QDW58_RS25400 (112381) | 112381..113109 | + | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| QDW58_RS25405 (113109) | 113109..113711 | + | 603 | Protein_113 | conjugal transfer protein TraB | - |
| QDW58_RS25410 (113708) | 113708..115149 | + | 1442 | Protein_114 | conjugal transfer protein TraG | - |
| QDW58_RS25415 (115146) | 115146..115655 | + | 510 | WP_000628107.1 | conjugal transfer entry exclusion protein TraS | - |
| QDW58_RS25420 (115669) | 115669..116400 | + | 732 | WP_000850422.1 | conjugal transfer complement resistance protein TraT | - |
| QDW58_RS25425 (116653) | 116653..118806 | + | 2154 | WP_000009325.1 | type IV conjugative transfer system coupling protein TraD | - |
| QDW58_RS25430 (118815) | 118815..119213 | - | 399 | WP_000911333.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| QDW58_RS25435 (119213) | 119213..119440 | - | 228 | WP_000450520.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| QDW58_RS25440 (119522) | 119522..124792 | + | 5271 | WP_021513980.1 | Multifunctional conjugation protein TraI | Relaxase |
| QDW58_RS25445 (124812) | 124812..125558 | + | 747 | WP_000205749.1 | conjugal transfer pilus acetylase TraX | - |
| QDW58_RS25450 (125617) | 125617..126477 | + | 861 | WP_000704513.1 | putative protein YcjY | VF |
| QDW58_RS25455 (126580) | 126580..127140 | + | 561 | WP_000139315.1 | fertility inhibition protein FinO | - |
| QDW58_RS25460 (127276) | 127276..127488 | + | 213 | WP_001299730.1 | ANR family transcriptional regulator | - |
| QDW58_RS25465 (127734) | 127734..127808 | + | 75 | Protein_125 | endonuclease | - |
| - (128064) | 128064..128125 | - | 62 | NuclAT_1 | - | - |
| - (128064) | 128064..128125 | - | 62 | NuclAT_1 | - | - |
| - (128064) | 128064..128125 | - | 62 | NuclAT_1 | - | - |
| - (128064) | 128064..128125 | - | 62 | NuclAT_1 | - | - |
| QDW58_RS25470 (128169) | 128169..128318 | + | 150 | WP_001312851.1 | Hok/Gef family protein | - |
| QDW58_RS25475 (128602) | 128602..128859 | + | 258 | WP_000083845.1 | replication regulatory protein RepA | - |
| QDW58_RS25480 (128876) | 128876..129127 | - | 252 | WP_223195197.1 | replication protein RepA | - |
| QDW58_RS25485 (129118) | 129118..129165 | + | 48 | WP_229471593.1 | hypothetical protein | - |
| QDW58_RS25490 (129158) | 129158..129640 | + | 483 | WP_001273588.1 | hypothetical protein | - |
| QDW58_RS25495 (129633) | 129633..130490 | + | 858 | WP_098723225.1 | incFII family plasmid replication initiator RepA | - |
| QDW58_RS25500 (131453) | 131453..131704 | + | 252 | WP_001132900.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| QDW58_RS25505 (131701) | 131701..131988 | + | 288 | WP_000222766.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| QDW58_RS25510 (132257) | 132257..132751 | - | 495 | Protein_134 | IS3 family transposase IS629 | Transposase |
| QDW58_RS25515 (132941) | 132941..134518 | - | 1578 | WP_098723224.1 | Aerotaxis receptor | VF |
| QDW58_RS25520 (134828) | 134828..135388 | + | 561 | WP_001161490.1 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| QDW58_RS25525 (135392) | 135392..138358 | + | 2967 | WP_001138014.1 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| QDW58_RS25530 (138391) | 138391..139115 | - | 725 | Protein_138 | IS3 family transposase IS629 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|