MGE detailed information
MGE type: Prophage MGE length: 33462 bp
Accession: NZ_CP122318 Location: 1250251..1283712 Organism: Escherichia coli strain HT873X1 Replicon: chromosome
Accession: NZ_CP122318 Location: 1250251..1283712 Organism: Escherichia coli strain HT873X1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QCG45_RS06050 (1246150) | 1246150..1247370 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| QCG45_RS06055 (1247495) | 1247495..1248190 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| QCG45_RS06060 (1248143) | 1248143..1249435 | - | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| QCG45_RS06065 (1249594) | 1249594..1250208 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| QCG45_RS06070 (1250251) | 1250251..1251105 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| QCG45_RS06075 (1251107) | 1251107..1251724 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| QCG45_RS06080 (1251735) | 1251735..1254158 | - | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| QCG45_RS06085 (1254219) | 1254219..1256645 | - | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| QCG45_RS06090 (1256844) | 1256844..1257149 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| QCG45_RS06095 (1257257) | 1257257..1257967 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| QCG45_RS06100 (1257970) | 1257970..1258530 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| QCG45_RS06105 (1258565) | 1258565..1258906 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| QCG45_RS06110 (1259041) | 1259041..1259367 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| QCG45_RS06115 (1259573) | 1259573..1260787 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| QCG45_RS06120 (1260799) | 1260799..1261818 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| QCG45_RS06125 (1262006) | 1262006..1263163 | - | 1158 | Protein_1194 | Putative defective protein IntQ ; Integrase | Integrase |
| QCG45_RS06130 (1263177) | 1263177..1263872 | - | 696 | Protein_1195 | IS3 family transposase IS2 | Transposase |
| QCG45_RS06135 (1263869) | 1263869..1264636 | - | 768 | Protein_1196 | exonuclease | - |
| QCG45_RS06140 (1264729) | 1264729..1264920 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| QCG45_RS06145 (1264917) | 1264917..1265105 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| QCG45_RS06150 (1265673) | 1265673..1265891 | - | 219 | WP_001171942.1 | protein YdfC | - |
| QCG45_RS06155 (1265921) | 1265921..1266049 | - | 129 | WP_000344964.1 | protein YdfB | - |
| QCG45_RS06160 (1266051) | 1266051..1266206 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| QCG45_RS06165 (1266373) | 1266373..1266780 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| QCG45_RS06170 (1266864) | 1266864..1267094 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| QCG45_RS06175 (1267078) | 1267078..1267356 | + | 279 | Protein_1204 | protein YdfX | - |
| QCG45_RS06180 (1267391) | 1267391..1267540 | + | 150 | WP_011443592.1 | protein YdfW | - |
| QCG45_RS06185 (1267977) | 1267977..1268309 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| QCG45_RS06190 (1268512) | 1268512..1268817 | - | 306 | WP_001326990.1 | protein YdfV | - |
| QCG45_RS06195 (1268842) | 1268842..1269081 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| QCG45_RS06200 (1269081) | 1269081..1269368 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| QCG45_RS06205 (1269440) | 1269440..1269595 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| QCG45_RS06210 (1269812) | 1269812..1270063 | + | 252 | WP_000980994.1 | protein Rem | - |
| QCG45_RS06215 (1270130) | 1270130..1270408 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| QCG45_RS06220 (1270410) | 1270410..1271459 | + | 1050 | WP_001393597.1 | DUF968 domain-containing protein | - |
| QCG45_RS06225 (1271473) | 1271473..1272225 | + | 753 | WP_001047135.1 | antitermination protein | - |
| QCG45_RS06230 (1272503) | 1272503..1272592 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| QCG45_RS06235 (1272647) | 1272647..1272859 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| QCG45_RS06240 (1273160) | 1273160..1273375 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| QCG45_RS06245 (1273739) | 1273739..1273909 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| QCG45_RS06250 (1274129) | 1274129..1274344 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| QCG45_RS06255 (1274349) | 1274349..1274660 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| QCG45_RS06260 (1274657) | 1274657..1275190 | + | 534 | WP_001092971.1 | lysozyme | - |
| QCG45_RS06265 (1275187) | 1275187..1275684 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| QCG45_RS06270 (1276047) | 1276047..1276259 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| QCG45_RS06275 (1276270) | 1276270..1276458 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| QCG45_RS06280 (1276461) | 1276461..1276526 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| QCG45_RS06285 (1276932) | 1276932..1277105 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| QCG45_RS06290 (1277257) | 1277257..1277667 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| QCG45_RS06295 (1277725) | 1277725..1277958 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| QCG45_RS06300 (1278347) | 1278347..1278916 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| QCG45_RS06305 (1278867) | 1278867..1279829 | + | 963 | WP_001027733.1 | phage tail protein | - |
| QCG45_RS06310 (1279829) | 1279829..1280404 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| QCG45_RS06315 (1280502) | 1280502..1281092 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| QCG45_RS06320 (1281409) | 1281409..1281642 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| QCG45_RS06325 (1281711) | 1281711..1281824 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| QCG45_RS06330 (1282345) | 1282345..1283712 | + | 1368 | Protein_1235 | MHS family MFS transporter | - |
| QCG45_RS06335 (1283801) | 1283801..1285261 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| QCG45_RS06340 (1285296) | 1285296..1285499 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| QCG45_RS06345 (1285676) | 1285676..1286362 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| QCG45_RS06350 (1286451) | 1286451..1287197 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0 |