MGE detailed information
MGE type: Prophage MGE length: 33462 bp
Accession: NZ_CP122316 Location: 1216837..1250298 Organism: Escherichia coli strain HT-946 Replicon: chromosome
Accession: NZ_CP122316 Location: 1216837..1250298 Organism: Escherichia coli strain HT-946 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QCG48_RS05915 (1212736) | 1212736..1213956 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| QCG48_RS05920 (1214081) | 1214081..1214776 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| QCG48_RS05925 (1214729) | 1214729..1216021 | - | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| QCG48_RS05930 (1216180) | 1216180..1216794 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| QCG48_RS05935 (1216837) | 1216837..1217691 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| QCG48_RS05940 (1217693) | 1217693..1218310 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| QCG48_RS05945 (1218321) | 1218321..1220744 | - | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| QCG48_RS05950 (1220805) | 1220805..1223231 | - | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| QCG48_RS05955 (1223430) | 1223430..1223735 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| QCG48_RS05960 (1223843) | 1223843..1224553 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| QCG48_RS05965 (1224556) | 1224556..1225116 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| QCG48_RS05970 (1225151) | 1225151..1225492 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| QCG48_RS05975 (1225627) | 1225627..1225953 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| QCG48_RS05980 (1226159) | 1226159..1227373 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| QCG48_RS05985 (1227385) | 1227385..1228404 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| QCG48_RS05990 (1228592) | 1228592..1229749 | - | 1158 | Protein_1167 | Putative defective protein IntQ ; Integrase | Integrase |
| QCG48_RS05995 (1229763) | 1229763..1230458 | - | 696 | Protein_1168 | IS3 family transposase IS2 | Transposase |
| QCG48_RS06000 (1230455) | 1230455..1231222 | - | 768 | Protein_1169 | exonuclease | - |
| QCG48_RS06005 (1231315) | 1231315..1231506 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| QCG48_RS06010 (1231503) | 1231503..1231691 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| QCG48_RS06015 (1232259) | 1232259..1232477 | - | 219 | WP_001171942.1 | protein YdfC | - |
| QCG48_RS06020 (1232507) | 1232507..1232635 | - | 129 | WP_000344964.1 | protein YdfB | - |
| QCG48_RS06025 (1232637) | 1232637..1232792 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| QCG48_RS06030 (1232959) | 1232959..1233366 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| QCG48_RS06035 (1233450) | 1233450..1233680 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| QCG48_RS06040 (1233664) | 1233664..1233942 | + | 279 | Protein_1177 | protein YdfX | - |
| QCG48_RS06045 (1233977) | 1233977..1234126 | + | 150 | WP_011443592.1 | protein YdfW | - |
| QCG48_RS06050 (1234563) | 1234563..1234895 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| QCG48_RS06055 (1235098) | 1235098..1235403 | - | 306 | WP_001326990.1 | protein YdfV | - |
| QCG48_RS06060 (1235428) | 1235428..1235667 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| QCG48_RS06065 (1235667) | 1235667..1235954 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| QCG48_RS06070 (1236026) | 1236026..1236181 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| QCG48_RS06075 (1236398) | 1236398..1236649 | + | 252 | WP_000980994.1 | protein Rem | - |
| QCG48_RS06080 (1236716) | 1236716..1236994 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| QCG48_RS06085 (1236996) | 1236996..1238045 | + | 1050 | WP_001393597.1 | DUF968 domain-containing protein | - |
| QCG48_RS06090 (1238059) | 1238059..1238811 | + | 753 | WP_001047135.1 | antitermination protein | - |
| QCG48_RS06095 (1239089) | 1239089..1239178 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| QCG48_RS06100 (1239233) | 1239233..1239445 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| QCG48_RS06105 (1239746) | 1239746..1239961 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| QCG48_RS06110 (1240325) | 1240325..1240495 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| QCG48_RS06115 (1240715) | 1240715..1240930 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| QCG48_RS06120 (1240935) | 1240935..1241246 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| QCG48_RS06125 (1241243) | 1241243..1241776 | + | 534 | WP_001092971.1 | lysozyme | - |
| QCG48_RS06130 (1241773) | 1241773..1242270 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| QCG48_RS06135 (1242633) | 1242633..1242845 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| QCG48_RS06140 (1242856) | 1242856..1243044 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| QCG48_RS06145 (1243047) | 1243047..1243112 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| QCG48_RS06150 (1243191) | 1243191..1243346 | + | 156 | WP_001309517.1 | protein YnfN | - |
| QCG48_RS06155 (1243518) | 1243518..1243691 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| QCG48_RS06160 (1243843) | 1243843..1244253 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| QCG48_RS06165 (1244311) | 1244311..1244544 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| QCG48_RS06170 (1244933) | 1244933..1245502 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| QCG48_RS06175 (1245453) | 1245453..1246415 | + | 963 | WP_001027733.1 | phage tail protein | - |
| QCG48_RS06180 (1246415) | 1246415..1246990 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| QCG48_RS06185 (1247088) | 1247088..1247678 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| QCG48_RS06190 (1247995) | 1247995..1248228 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| QCG48_RS06195 (1248297) | 1248297..1248410 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| QCG48_RS06200 (1248931) | 1248931..1250298 | + | 1368 | Protein_1209 | MHS family MFS transporter | - |
| QCG48_RS06205 (1250387) | 1250387..1251847 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| QCG48_RS06210 (1251882) | 1251882..1252085 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| QCG48_RS06215 (1252262) | 1252262..1252948 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| QCG48_RS06220 (1253037) | 1253037..1253783 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0 |