MGE detailed information
MGE type: Prophage MGE length: 40838 bp
Accession: NZ_CP117971 Location: 2577962..2618799 Organism: Escherichia coli strain B-1109 Replicon: chromosome
Accession: NZ_CP117971 Location: 2577962..2618799 Organism: Escherichia coli strain B-1109 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PT723_RS12415 (2573861) | 2573861..2575081 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| PT723_RS12420 (2575206) | 2575206..2575901 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| PT723_RS12425 (2575854) | 2575854..2577146 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| PT723_RS12430 (2577305) | 2577305..2577919 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| PT723_RS12435 (2577962) | 2577962..2578816 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| PT723_RS12440 (2578818) | 2578818..2579435 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| PT723_RS12445 (2579446) | 2579446..2581869 | - | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| PT723_RS12450 (2581930) | 2581930..2584356 | - | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| PT723_RS12455 (2584555) | 2584555..2584860 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| PT723_RS12460 (2584968) | 2584968..2585678 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| PT723_RS12465 (2585681) | 2585681..2586241 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| PT723_RS12470 (2586276) | 2586276..2586617 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| PT723_RS12475 (2586752) | 2586752..2587078 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| PT723_RS12480 (2587284) | 2587284..2588498 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| PT723_RS12485 (2588510) | 2588510..2589529 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| PT723_RS12490 (2589717) | 2589717..2590997 | - | 1281 | WP_000876958.1 | Putative defective protein IntQ ; Integrase | Integrase |
| PT723_RS12495 (2591032) | 2591032..2591283 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| PT723_RS12500 (2591356) | 2591356..2593827 | - | 2472 | WP_000048342.1 | exonuclease | - |
| PT723_RS12505 (2593920) | 2593920..2594111 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| PT723_RS12510 (2594108) | 2594108..2594296 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| PT723_RS12515 (2594864) | 2594864..2595082 | - | 219 | WP_001171942.1 | protein YdfC | - |
| PT723_RS12520 (2595112) | 2595112..2595240 | - | 129 | WP_000344964.1 | protein YdfB | - |
| PT723_RS12525 (2595242) | 2595242..2595397 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| PT723_RS12530 (2595564) | 2595564..2595971 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| PT723_RS12535 (2596055) | 2596055..2596285 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| PT723_RS12540 (2596269) | 2596269..2596790 | + | 522 | WP_000705358.1 | toxin YdaT family protein | - |
| PT723_RS12545 (2596771) | 2596771..2597736 | + | 966 | Protein_2435 | hypothetical protein | - |
| PT723_RS12550 (2597777) | 2597777..2598198 | + | 422 | Protein_2436 | DUF977 family protein | - |
| PT723_RS12555 (2598195) | 2598195..2598684 | + | 490 | Protein_2437 | class I SAM-dependent methyltransferase | - |
| PT723_RS12560 (2599162) | 2599162..2599583 | + | 422 | Protein_2438 | hypothetical protein | - |
| PT723_RS12565 (2600239) | 2600239..2601261 | + | 1023 | Protein_2439 | ISNCY family transposase ISCARN112 | Transposase |
| PT723_RS12570 (2601382) | 2601382..2601531 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| PT723_RS12575 (2601968) | 2601968..2602300 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| PT723_RS12580 (2602503) | 2602503..2602808 | - | 306 | WP_001326990.1 | protein YdfV | - |
| PT723_RS12585 (2602833) | 2602833..2603072 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| PT723_RS12590 (2603072) | 2603072..2603359 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| PT723_RS12595 (2603431) | 2603431..2603511 | + | 81 | Protein_2445 | type I toxin-antitoxin system toxin HokD | - |
| PT723_RS12600 (2603578) | 2603578..2604379 | + | 802 | Protein_2446 | IS3 family transposase IS3 | Transposase |
| PT723_RS12605 (2604441) | 2604441..2605490 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| PT723_RS12610 (2605504) | 2605504..2606256 | + | 753 | WP_001047135.1 | antitermination protein | - |
| PT723_RS12615 (2606534) | 2606534..2606623 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| PT723_RS12620 (2606678) | 2606678..2606890 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| PT723_RS12625 (2607191) | 2607191..2607406 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| PT723_RS12630 (2607770) | 2607770..2607940 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| PT723_RS12635 (2608160) | 2608160..2608375 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| PT723_RS12640 (2608380) | 2608380..2608691 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| PT723_RS12645 (2608688) | 2608688..2609221 | + | 534 | WP_001092971.1 | lysozyme | - |
| PT723_RS12650 (2609218) | 2609218..2609715 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| PT723_RS12655 (2610078) | 2610078..2610290 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| PT723_RS12660 (2610301) | 2610301..2610489 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| PT723_RS12665 (2610492) | 2610492..2610557 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| PT723_RS12670 (2610636) | 2610636..2610791 | + | 156 | WP_001309517.1 | protein YnfN | - |
| PT723_RS12675 (2610963) | 2610963..2611136 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| PT723_RS12680 (2611288) | 2611288..2611494 | - | 207 | Protein_2462 | DUF1398 family protein | - |
| PT723_RS12685 (2611549) | 2611549..2612246 | + | 698 | WP_094096600.1 | IS1 family transposase IS1A | Transposase |
| PT723_RS12690 (2612266) | 2612266..2612475 | - | 210 | Protein_2464 | DUF1398 family protein | - |
| PT723_RS12695 (2612533) | 2612533..2612766 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| PT723_RS12700 (2613155) | 2613155..2613256 | + | 102 | Protein_2466 | terminase small subunit | - |
| PT723_RS12705 (2613257) | 2613257..2614012 | + | 756 | Protein_2467 | host specificity protein J | - |
| PT723_RS12710 (2613990) | 2613990..2614916 | + | 927 | WP_137044302.1 | phage tail protein | - |
| PT723_RS12715 (2614916) | 2614916..2615491 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| PT723_RS12720 (2615589) | 2615589..2616179 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| PT723_RS12725 (2616496) | 2616496..2616729 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| PT723_RS12730 (2616798) | 2616798..2616911 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| PT723_RS12735 (2617432) | 2617432..2618799 | + | 1368 | Protein_2473 | MHS family MFS transporter | - |
| PT723_RS12740 (2618888) | 2618888..2620348 | + | 1461 | WP_000527809.1 | mannitol dehydrogenase family protein | - |
| PT723_RS12745 (2620383) | 2620383..2620586 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| PT723_RS12750 (2620763) | 2620763..2621449 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| PT723_RS12755 (2621538) | 2621538..2622284 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.008 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.008 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.008 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.008 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.008 |