NZ_CP1169711..164599

MGE detailed information

MGE type: Conjugative plasmid        MGE length: 164599 bp
Accession: NZ_CP116971        Location: 1..164599         Organism: Escherichia coli strain CUVM3       Replicon: plasmid pCUVM3.1


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PQP09_RS24055 (1) 1..978 + 978 WP_000361612.1 RepB family plasmid replication initiator protein -
PQP09_RS24060 (1263) 1263..2003 - 741 WP_001066941.1 tyrosine-type recombinase/integrase -
PQP09_RS24065 (2124) 2124..2285 - 162 WP_063079306.1 hypothetical protein -
PQP09_RS24070 (2338) 2338..2688 + 351 WP_032339070.1 YgiW/YdeI family stress tolerance OB fold protein -
PQP09_RS24075 (2926) 2926..3801 + 876 WP_050593755.1 CDF family zinc transporter ZitB -
PQP09_RS24080 (4300) 4300..4515 + 216 WP_029488778.1 hypothetical protein -
PQP09_RS24085 (4610) 4610..4885 - 276 WP_029488779.1 hypothetical protein -
PQP09_RS24095 (6097) 6097..6378 + 282 WP_272784648.1 Major pilu subunit operon regulatory protein PapB VF
PQP09_RS24100 (6535) 6535..6906 + 372 WP_029488780.1 hypothetical protein VF
PQP09_RS24105 (6945) 6945..7589 + 645 WP_029488781.1 Tn3 family transposase TnpR_TnEc1 Transposase
PQP09_RS24110 (7947) 7947..8207 + 261 WP_143362514.1 hypothetical protein -
PQP09_RS24115 (8252) 8252..8452 - 201 Protein_11 zinc ribbon domain-containing protein -
PQP09_RS24120 (8759) 8759..9921 + 1163 WP_085947598.1 IS3 family transposase ISEc17 Transposase
PQP09_RS24125 (9952) 9952..10206 + 255 Protein_13 IS66 family transposase -
PQP09_RS24130 (10375) 10375..11603 + 1229 WP_089541817.1 IS3 family transposase IS2 Transposase
PQP09_RS24135 (12507) 12507..13250 + 744 WP_050593764.1 Chaperone protein caf1M VF
PQP09_RS24140 (13270) 13270..15720 + 2451 WP_029488855.1 F1 capsule-anchoring protein VF
PQP09_RS24145 (15790) 15790..16320 + 531 WP_029488854.1 hypothetical protein -
PQP09_RS24150 (16845) 16845..17090 + 246 Protein_18 IS3 family transposase ISEhe3 Transposase
PQP09_RS24155 (17103) 17103..18254 - 1152 WP_001373172.1 IS30 family transposase IS30D Transposase
PQP09_RS24160 (18315) 18315..19061 + 747 Protein_20 IS3 family transposase ISEhe3 Transposase
PQP09_RS24165 (19582) 19582..19884 + 303 WP_029488886.1 Major pilu subunit operon regulatory protein PapB VF
PQP09_RS24175 (21721) 21721..21816 - 96 Protein_23 hypothetical protein -
PQP09_RS24180 (22099) 22099..22866 + 768 WP_001711193.1 hypothetical protein -
PQP09_RS24185 (22919) 22919..23272 - 354 WP_162778042.1 hypothetical protein -
PQP09_RS24190 (23335) 23335..23728 + 394 Protein_26 IS3 family transposase IS911 Transposase
PQP09_RS24195 (23808) 23808..25202 + 1395 WP_143362513.1 hypothetical protein -
PQP09_RS24200 (25504) 25504..26694 - 1191 Protein_28 restriction endonuclease subunit R -
PQP09_RS24205 (26705) 26705..27679 - 975 WP_012478345.1 IS30 family transposase ISApl1 Transposase
PQP09_RS24210 (27761) 27761..29653 - 1893 WP_272784655.1 DEAD/DEAH box helicase family protein -
PQP09_RS24215 (29663) 29663..31687 - 2025 WP_256626911.1 site-specific DNA-methyltransferase -
PQP09_RS24220 (31894) 31894..32580 - 687 WP_029488864.1 DUF4391 domain-containing protein -
PQP09_RS24225 (32584) 32584..35916 - 3333 WP_029488865.1 SNF2-related protein -
PQP09_RS24230 (35954) 35954..36251 - 298 Protein_34 WYL domain-containing protein -
PQP09_RS24235 (36324) 36324..36581 + 258 Protein_35 IS3 family transposase IS911 Transposase
PQP09_RS24240 (36649) 36649..37800 + 1152 WP_001373172.1 IS30 family transposase IS30D Transposase
PQP09_RS24245 (37858) 37858..38192 - 335 Protein_37 IS630 family transposase ISEc33 Transposase
PQP09_RS24250 (38554) 38554..39231 + 678 WP_029488819.1 hypothetical protein -
PQP09_RS24255 (39455) 39455..39733 + 279 Protein_39 IS3 family transposase ISEc17 Transposase
PQP09_RS24260 (39830) 39830..40940 + 1111 WP_114138044.1 IS3 family transposase IS1351 Transposase
PQP09_RS24265 (40927) 40927..41265 + 339 Protein_41 conjugation system SOS inhibitor PsiB -
PQP09_RS24270 (41264) 41264..41817 + 554 Protein_42 plasmid SOS inhibition protein A -
PQP09_RS24275 (41929) 41929..42400 - 472 Protein_43 IS630 family transposase IS630 Transposase
PQP09_RS24280 (42658) 42658..43413 - 756 WP_001282653.1 IS21 family transposase ISSso4 Transposase
PQP09_RS24285 (43430) 43430..44965 - 1536 WP_029488823.1 IS21 family transposase ISSso4 Transposase
PQP09_RS24290 (45584) 45584..46921 + 1338 WP_029488891.1 IS4 family transposase ISCro3 Transposase
PQP09_RS24295 (47347) 47347..47823 + 477 WP_029488813.1 hypothetical protein VF
PQP09_RS24300 (47826) 47826..49304 + 1479 WP_029488812.1 hypothetical protein VF
PQP09_RS24305 (49326) 49326..49811 + 486 WP_029488811.1 hypothetical protein -
PQP09_RS24310 (49847) 49847..50260 + 414 WP_029488810.1 hypothetical protein -
PQP09_RS24315 (50253) 50253..52040 + 1788 WP_029488809.1 type VI secretion system baseplate subunit TssF -
PQP09_RS24320 (52031) 52031..52960 + 930 WP_029488808.1 type VI secretion system baseplate subunit TssG -
PQP09_RS24325 (52971) 52971..54902 + 1932 WP_029488807.1 type VI secretion system tip protein TssI/VgrG -
PQP09_RS24330 (54895) 54895..55356 + 462 WP_077696971.1 hypothetical protein -
PQP09_RS24335 (55366) 55366..55665 + 300 WP_170867412.1 PAAR domain-containing protein -
PQP09_RS24340 (55669) 55669..56733 + 1065 WP_029488805.1 type VI secretion system protein TssA -
PQP09_RS24345 (56950) 56950..57195 + 246 Protein_57 IS3 family transposase ISEhe3 Transposase
PQP09_RS24350 (57263) 57263..58414 + 1152 WP_195686664.1 IS30 family transposase IS30D Transposase
PQP09_RS24355 (58422) 58422..59123 + 702 Protein_59 IS3 family transposase ISEhe3 Transposase
PQP09_RS24360 (59256) 59256..59873 - 618 Protein_60 IS1 family transposase -
PQP09_RS24365 (60850) 60850..61422 + 573 WP_029488786.1 type VI secretion lipoprotein TssJ -
PQP09_RS24370 (61424) 61424..62836 + 1413 WP_029488787.1 type VI secretion system baseplate subunit TssK -
PQP09_RS24375 (62871) 62871..63461 + 591 WP_029488788.1 hypothetical protein VF
PQP09_RS24380 (63532) 63532..66879 + 3348 WP_256626913.1 type VI secretion system protein -
PQP09_RS24385 (66889) 66889..69420 + 2532 WP_063115580.1 Protein ClpV1 VF
PQP09_RS24390 (69453) 69453..70505 + 1053 WP_148723451.1 type VI secretion system ImpA family N-terminal domain-containing protein -
PQP09_RS24395 (70981) 70981..71550 + 570 WP_063104712.1 hypothetical protein VF
PQP09_RS24400 (71740) 71740..71877 + 138 Protein_68 IS630 family transposase -
PQP09_RS24410 (73145) 73145..73455 + 311 Protein_70 IS630 family transposase -
PQP09_RS24415 (73493) 73493..73795 + 303 Protein_71 IS3 family transposase ISEc31 Transposase
PQP09_RS24420 (73863) 73863..74237 + 375 Protein_72 IS30 family transposase IS30D Transposase
PQP09_RS24425 (74325) 74325..75299 + 975 WP_012478345.1 IS30 family transposase ISApl1 Transposase
PQP09_RS24430 (75310) 75310..75615 + 306 Protein_74 IS30 family transposase IS30D Transposase
PQP09_RS24435 (75989) 75989..76909 + 921 WP_029488882.1 hypothetical protein -
PQP09_RS24440 (77093) 77093..78318 + 1226 Protein_76 IS3 family transposase -
PQP09_RS24445 (78590) 78590..79201 - 612 WP_029488843.1 hypothetical protein -
PQP09_RS24450 (79590) 79590..79967 - 378 Protein_78 IS3 family transposase ISBmu11 Transposase
PQP09_RS24455 (80338) 80338..81147 - 810 WP_029488841.1 hypothetical protein -
PQP09_RS24460 (81420) 81420..81885 + 466 Protein_80 hypothetical protein -
PQP09_RS24465 (82421) 82421..83227 + 807 Protein_81 DUF2219 family protein -
PQP09_RS24470 (83497) 83497..83805 - 309 Protein_82 IS3 family transposase ISCfr6 Transposase
PQP09_RS24475 (83822) 83822..84898 - 1077 WP_000227970.1 IS110 family transposase ISEc21 Transposase
PQP09_RS24480 (85180) 85180..85776 - 597 Protein_84 IS3 family transposase ISEc31 Transposase
PQP09_RS24485 (85785) 85785..86936 - 1152 WP_272784612.1 IS30 family transposase IS30D Transposase
PQP09_RS24490 (87004) 87004..87306 - 303 Protein_86 IS3 family transposase ISEc31 Transposase
PQP09_RS24495 (87342) 87342..87539 - 198 Protein_87 3'-5' exonuclease -
PQP09_RS24500 (87579) 87579..87857 - 279 WP_001384452.1 type II toxin-antitoxin system toxin YacB Toxin Detail
PQP09_RS24505 (87857) 87857..88126 - 270 WP_000079923.1 type II toxin-antitoxin system antitoxin YacA Antitoxin Detail
PQP09_RS24510 (88199) 88199..88339 - 141 WP_162777809.1 hypothetical protein -
PQP09_RS24515 (89033) 89033..89889 - 857 Protein_91 incFII family plasmid replication initiator RepA -
PQP09_RS24520 (89882) 89882..89956 - 75 WP_001365705.1 RepA leader peptide Tap -
PQP09_RS24525 (90005) 90005..90130 + 126 WP_001436741.1 hypothetical protein -
PQP09_RS24530 (90203) 90203..90451 - 249 WP_000083838.1 replication regulatory protein RepA -
PQP09_RS24535 (90735) 90735..90884 - 150 WP_074152653.1 Hok/Gef family protein Toxin Detail
- (90928) 90928..90989 + 62 NuclAT_1 - Antitoxin Detail
- (90928) 90928..90989 + 62 NuclAT_1 - Antitoxin Detail
- (90928) 90928..90989 + 62 NuclAT_1 - Antitoxin Detail
- (90928) 90928..90989 + 62 NuclAT_1 - Antitoxin Detail
PQP09_RS24540 (91248) 91248..91547 - 300 WP_050593763.1 hypothetical protein -
PQP09_RS24545 (91665) 91665..92111 - 447 WP_063115548.1 thermonuclease family protein -
PQP09_RS24550 (92249) 92249..93862 - 1614 WP_047063389.1 IS66 family transposase ISEc23 Transposase
PQP09_RS24555 (93893) 93893..94243 - 351 WP_001565133.1 IS66 family transposase ISEc47 Transposase
PQP09_RS24560 (94240) 94240..94665 - 426 WP_000422741.1 IS66 family transposase ISEc23 Transposase
PQP09_RS24565 (95394) 95394..95597 - 204 WP_001327131.1 hypothetical protein -
PQP09_RS24570 (95752) 95752..96309 - 558 WP_000139319.1 fertility inhibition protein FinO -
PQP09_RS24575 (96412) 96412..97272 - 861 WP_063115579.1 Quorum-quenching protein AidA VF
PQP09_RS24580 (97331) 97331..98077 - 747 WP_032285008.1 conjugal transfer pilus acetylase TraX -
PQP09_RS24585 (98097) 98097..103367 - 5271 WP_112046978.1 Multifunctional conjugation protein TraI Relaxase
PQP09_RS24590 (103449) 103449..103676 + 228 WP_000450532.1 toxin-antitoxin system antitoxin VapB Antitoxin Detail
PQP09_RS24595 (103676) 103676..104074 + 399 WP_000911313.1 type II toxin-antitoxin system VapC family toxin Toxin Detail
PQP09_RS24600 (104083) 104083..106236 - 2154 WP_072664524.1 type IV conjugative transfer system coupling protein TraD -
PQP09_RS24605 (106489) 106489..107220 - 732 WP_023565183.1 conjugal transfer complement resistance protein TraT -
PQP09_RS24610 (107252) 107252..107749 - 498 WP_000605859.1 entry exclusion protein -
PQP09_RS24615 (107765) 107765..110587 - 2823 WP_247785466.1 conjugal transfer mating-pair stabilization protein TraG -
PQP09_RS24620 (110584) 110584..111957 - 1374 WP_187642521.1 conjugal transfer pilus assembly protein TraH -
PQP09_RS24625 (111957) 111957..112337 - 381 WP_063115550.1 F-type conjugal transfer protein TrbF -
PQP09_RS24630 (112324) 112324..112665 - 342 WP_001443031.1 P-type conjugative transfer protein TrbJ -
PQP09_RS24635 (112595) 112595..113140 - 546 WP_063115183.1 type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB -
PQP09_RS24640 (113127) 113127..113411 - 285 WP_063115182.1 type-F conjugative transfer system pilin chaperone TraQ -
PQP09_RS24645 (113492) 113492..113806 + 315 WP_000415566.1 protein ArtA -
PQP09_RS24650 (113808) 113808..114155 - 348 WP_063115181.1 conjugal transfer protein TrbA -
PQP09_RS24655 (114171) 114171..114914 - 744 WP_001030378.1 type-F conjugative transfer system pilin assembly protein TraF -
PQP09_RS24660 (114907) 114907..115164 - 258 WP_063115180.1 conjugal transfer protein TrbE -
PQP09_RS24665 (115191) 115191..116999 - 1809 WP_000821838.1 type-F conjugative transfer system mating-pair stabilization protein TraN -
PQP09_RS24670 (116996) 116996..117634 - 639 WP_000777695.1 type-F conjugative transfer system pilin assembly protein TrbC -
PQP09_RS24675 (117643) 117643..118635 - 993 WP_000830183.1 conjugal transfer pilus assembly protein TraU -
PQP09_RS24680 (118632) 118632..119264 - 633 WP_001203720.1 type-F conjugative transfer system protein TraW -
PQP09_RS24685 (119261) 119261..119647 - 387 WP_000099690.1 type-F conjugative transfer system protein TrbI -
PQP09_RS24690 (119644) 119644..122271 - 2628 WP_247785402.1 type IV secretion system protein TraC -
PQP09_RS24695 (122431) 122431..122652 - 222 WP_074152942.1 conjugal transfer protein TraR -
PQP09_RS24700 (122787) 122787..123302 - 516 WP_000809838.1 type IV conjugative transfer system lipoprotein TraV -
PQP09_RS24705 (123299) 123299..123550 - 252 WP_001038342.1 conjugal transfer protein TrbG -
PQP09_RS24710 (123562) 123562..123759 - 198 WP_001324648.1 conjugal transfer protein TrbD -
PQP09_RS24715 (123746) 123746..124336 - 591 WP_000002788.1 conjugal transfer pilus-stabilizing protein TraP -
PQP09_RS24720 (124326) 124326..125753 - 1428 WP_000146685.1 F-type conjugal transfer pilus assembly protein TraB -
PQP09_RS24725 (125753) 125753..126481 - 729 WP_001230787.1 type-F conjugative transfer system secretin TraK -
PQP09_RS24730 (126468) 126468..127034 - 567 WP_000399792.1 type IV conjugative transfer system protein TraE -
PQP09_RS24735 (127056) 127056..127367 - 312 WP_029488850.1 type IV conjugative transfer system protein TraL -
PQP09_RS24740 (127382) 127382..127747 - 366 WP_000340270.1 type IV conjugative transfer system pilin TraA -
PQP09_RS24745 (127781) 127781..128008 - 228 WP_001254386.1 conjugal transfer relaxosome protein TraY -
PQP09_RS24750 (128102) 128102..128788 - 687 WP_063115179.1 PAS domain-containing protein -
PQP09_RS24755 (128978) 128978..129361 - 384 WP_000124981.1 conjugal transfer relaxosome DNA-binding protein TraM -
PQP09_RS24760 (129683) 129683..130285 + 603 WP_000243701.1 hypothetical protein VF
PQP09_RS24765 (130581) 130581..131402 - 822 WP_061856956.1 DUF932 domain-containing protein -
PQP09_RS24770 (131521) 131521..131808 - 288 WP_000107543.1 hypothetical protein -
PQP09_RS24775 (131833) 131833..132039 - 207 WP_024189527.1 hypothetical protein -
PQP09_RS24780 (132109) 132109..132406 + 298 Protein_144 hypothetical protein -
PQP09_RS24785 (132504) 132504..133154 + 651 WP_000993956.1 IS66 family transposase IS679 Transposase
PQP09_RS24790 (133154) 133154..133501 + 348 WP_000624622.1 IS66 family transposase ISCro1 Transposase
PQP09_RS24795 (133521) 133521..135092 + 1572 WP_094083869.1 IS66 family transposase ISCro1 Transposase
PQP09_RS24800 (135419) 135419..135541 - 123 WP_223195199.1 Hok/Gef family protein Toxin Detail
PQP09_RS24805 (135486) 135486..135599 - 114 Protein_149 DUF5431 family protein -
- (135633) 135633..135844 - 212 NuclAT_0 - Antitoxin Detail
- (135633) 135633..135844 - 212 NuclAT_0 - Antitoxin Detail
- (135633) 135633..135844 - 212 NuclAT_0 - Antitoxin Detail
- (135633) 135633..135844 - 212 NuclAT_0 - Antitoxin Detail
PQP09_RS24810 (135789) 135789..136575 - 787 Protein_150 plasmid SOS inhibition protein A -
PQP09_RS24815 (136572) 136572..137006 - 435 WP_000845926.1 conjugation system SOS inhibitor PsiB -
PQP09_RS24820 (137061) 137061..139020 - 1960 Protein_152 ParB/RepB/Spo0J family partition protein -
PQP09_RS24825 (139086) 139086..139319 - 234 WP_000006002.1 DUF905 family protein -
PQP09_RS24830 (139377) 139377..139805 - 429 WP_063115590.1 single-stranded DNA-binding protein -
PQP09_RS24835 (140505) 140505..140696 - 192 WP_025269849.1 hypothetical protein -
PQP09_RS24840 (140693) 140693..141115 - 423 WP_032248713.1 DUF1380 family protein -
PQP09_RS24845 (141162) 141162..141587 - 426 WP_001198928.1 antirestriction protein -
PQP09_RS24850 (142004) 142004..142774 - 771 Protein_158 hypothetical protein -
PQP09_RS24855 (142819) 142819..143196 - 378 WP_231289733.1 DUF1380 family protein -
PQP09_RS24860 (143318) 143318..144646 + 1329 WP_256626910.1 IS4 family transposase IS4 Transposase
PQP09_RS24865 (144657) 144657..144836 - 180 WP_032248832.1 hypothetical protein -
PQP09_RS24870 (144837) 144837..145520 - 684 WP_063115593.1 DNA methylase -
PQP09_RS24875 (145596) 145596..145907 - 312 WP_032248837.1 hypothetical protein -
PQP09_RS24880 (145904) 145904..146830 - 927 Protein_164 DUF1281 domain-containing protein -
PQP09_RS24885 (147587) 147587..148558 - 972 WP_032248840.1 ParB/RepB/Spo0J family plasmid partition protein -
PQP09_RS24890 (148558) 148558..149724 - 1167 WP_000772446.1 hypothetical protein VF
PQP09_RS24895 (150312) 150312..150485 - 174 Protein_167 RepB family plasmid replication initiator protein -
PQP09_RS24905 (151920) 151920..152584 - 665 Protein_169 site-specific integrase -
PQP09_RS24910 (152585) 152585..152890 - 306 WP_001159871.1 type II toxin-antitoxin system toxin CcdB Toxin Detail
PQP09_RS24915 (152892) 152892..153110 - 219 WP_000813639.1 type II toxin-antitoxin system antitoxin CcdA Antitoxin Detail
PQP09_RS24920 (153927) 153927..154217 - 291 WP_032248853.1 hypothetical protein -
PQP09_RS24925 (154214) 154214..155341 - 1128 WP_032248854.1 DUF4238 domain-containing protein -
PQP09_RS24930 (155375) 155375..156898 - 1524 WP_227464009.1 hypothetical protein -
PQP09_RS24935 (157175) 157175..157651 - 477 WP_032248785.1 hypothetical protein -
PQP09_RS24940 (157967) 157967..158467 - 501 WP_032248776.1 HEPN family nuclease -
PQP09_RS24945 (158852) 158852..159847 + 996 WP_000246636.1 hypothetical protein -
PQP09_RS24950 (159851) 159851..160783 + 933 WP_032248778.1 S-4TM family putative pore-forming effector -
PQP09_RS24955 (160809) 160809..161003 - 195 WP_077757823.1 hypothetical protein -
PQP09_RS24960 (163119) 163119..163760 + 642 WP_000990665.1 hypothetical protein -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance