MGE detailed information
MGE type: Genomic_island MGE length: 11673 bp
Accession: NZ_CP116110 Location: 605703..617375 Organism: Escherichia coli strain DETEC-P80 Replicon: chromosome
Accession: NZ_CP116110 Location: 605703..617375 Organism: Escherichia coli strain DETEC-P80 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIC84_RS02925 (600704) | 600704..601138 | - | 435 | WP_000948824.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
| PIC84_RS02930 (601156) | 601156..602034 | - | 879 | WP_001300474.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| PIC84_RS02935 (602024) | 602024..602803 | - | 780 | WP_000406214.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| PIC84_RS02940 (602814) | 602814..603287 | - | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| PIC84_RS02945 (603310) | 603310..604590 | - | 1281 | WP_000681903.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| PIC84_RS02950 (604839) | 604839..605648 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| PIC84_RS02955 (605703) | 605703..606167 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| PIC84_RS02960 (606167) | 606167..606502 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| PIC84_RS02965 (606651) | 606651..608222 | - | 1572 | WP_001723936.1 | galactarate dehydratase | - |
| PIC84_RS02970 (608597) | 608597..609931 | + | 1335 | WP_001723935.1 | galactarate/glucarate/glycerate transporter GarP | - |
| PIC84_RS02975 (609947) | 609947..610717 | + | 771 | WP_001723934.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| PIC84_RS02980 (610747) | 610747..611637 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| PIC84_RS02985 (611734) | 611734..612879 | + | 1146 | WP_001424370.1 | glycerate 2-kinase | - |
| PIC84_RS02995 (613902) | 613902..615089 | - | 1188 | WP_049253626.1 | YhaC family protein | - |
| PIC84_RS03000 (615111) | 615111..615649 | - | 539 | Protein_586 | protein YhaB | - |
| PIC84_RS03005 (615905) | 615905..616123 | - | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| PIC84_RS03010 (616437) | 616437..617375 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| PIC84_RS03015 (617474) | 617474..618463 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| PIC84_RS03020 (618485) | 618485..619816 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| PIC84_RS03025 (619842) | 619842..621050 | + | 1209 | WP_001295545.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.008 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.008 |