MGE detailed information
MGE type: Prophage MGE length: 34798 bp
Accession: NZ_CP114893 Location: 3451022..3485819 Organism: Escherichia coli strain CM13 Replicon: chromosome
Accession: NZ_CP114893 Location: 3451022..3485819 Organism: Escherichia coli strain CM13 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O6R07_RS16780 (3446921) | 3446921..3448141 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| O6R07_RS16785 (3448266) | 3448266..3448961 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| O6R07_RS16790 (3448914) | 3448914..3450206 | - | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| O6R07_RS16795 (3450365) | 3450365..3450979 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| O6R07_RS16800 (3451022) | 3451022..3451876 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| O6R07_RS16805 (3451878) | 3451878..3452495 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| O6R07_RS16810 (3452506) | 3452506..3454929 | - | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| O6R07_RS16815 (3454990) | 3454990..3457416 | - | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| O6R07_RS16820 (3457615) | 3457615..3457920 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| O6R07_RS16825 (3458028) | 3458028..3458738 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| O6R07_RS16830 (3458741) | 3458741..3459301 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| O6R07_RS16835 (3459336) | 3459336..3459677 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| O6R07_RS16840 (3459812) | 3459812..3460138 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| O6R07_RS16845 (3460344) | 3460344..3461558 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| O6R07_RS16850 (3461570) | 3461570..3462589 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| O6R07_RS16855 (3462777) | 3462777..3463634 | - | 858 | Protein_3275 | Putative defective protein IntQ ; Integrase | Integrase |
| O6R07_RS16860 (3463726) | 3463726..3464954 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| O6R07_RS16865 (3464965) | 3464965..3465270 | - | 306 | Protein_3277 | DUF3596 domain-containing protein | - |
| O6R07_RS16870 (3465284) | 3465284..3465979 | - | 696 | Protein_3278 | IS3 family transposase IS2 | Transposase |
| O6R07_RS16875 (3465976) | 3465976..3466743 | - | 768 | Protein_3279 | exonuclease | - |
| O6R07_RS16880 (3466836) | 3466836..3467027 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| O6R07_RS16885 (3467024) | 3467024..3467212 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| O6R07_RS16890 (3467780) | 3467780..3467998 | - | 219 | WP_001171942.1 | protein YdfC | - |
| O6R07_RS16895 (3468028) | 3468028..3468156 | - | 129 | WP_000344964.1 | protein YdfB | - |
| O6R07_RS16900 (3468158) | 3468158..3468313 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| O6R07_RS16905 (3468480) | 3468480..3468887 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| O6R07_RS16910 (3468971) | 3468971..3469201 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| O6R07_RS16915 (3469185) | 3469185..3469463 | + | 279 | Protein_3287 | protein YdfX | - |
| O6R07_RS16920 (3469498) | 3469498..3469647 | + | 150 | WP_011443592.1 | protein YdfW | - |
| O6R07_RS16925 (3470084) | 3470084..3470416 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| O6R07_RS16930 (3470619) | 3470619..3470924 | - | 306 | WP_001326990.1 | protein YdfV | - |
| O6R07_RS16935 (3470949) | 3470949..3471188 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| O6R07_RS16940 (3471188) | 3471188..3471475 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| O6R07_RS16945 (3471547) | 3471547..3471702 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| O6R07_RS16950 (3471919) | 3471919..3472170 | + | 252 | WP_000980994.1 | protein Rem | - |
| O6R07_RS16955 (3472237) | 3472237..3472515 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| O6R07_RS16960 (3472517) | 3472517..3473566 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| O6R07_RS16965 (3473580) | 3473580..3474332 | + | 753 | WP_001047135.1 | antitermination protein | - |
| O6R07_RS16970 (3474610) | 3474610..3474699 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| O6R07_RS16975 (3474754) | 3474754..3474966 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| O6R07_RS16980 (3475267) | 3475267..3475482 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| O6R07_RS16985 (3475846) | 3475846..3476016 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| O6R07_RS16990 (3476236) | 3476236..3476451 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| O6R07_RS16995 (3476456) | 3476456..3476767 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| O6R07_RS17000 (3476764) | 3476764..3477297 | + | 534 | WP_001092971.1 | lysozyme | - |
| O6R07_RS17005 (3477294) | 3477294..3477791 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| O6R07_RS17010 (3478154) | 3478154..3478366 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| O6R07_RS17015 (3478377) | 3478377..3478565 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| O6R07_RS17020 (3478568) | 3478568..3478633 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| O6R07_RS17025 (3478712) | 3478712..3478867 | + | 156 | WP_001309517.1 | protein YnfN | - |
| O6R07_RS17030 (3479039) | 3479039..3479212 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| O6R07_RS17035 (3479364) | 3479364..3479774 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| O6R07_RS17040 (3479832) | 3479832..3480065 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| O6R07_RS17045 (3480454) | 3480454..3481023 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| O6R07_RS17050 (3480974) | 3480974..3481936 | + | 963 | WP_001027733.1 | phage tail protein | - |
| O6R07_RS17055 (3481936) | 3481936..3482511 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| O6R07_RS17060 (3482609) | 3482609..3483199 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| O6R07_RS17065 (3483516) | 3483516..3483749 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| O6R07_RS17070 (3483818) | 3483818..3483931 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| O6R07_RS17075 (3484452) | 3484452..3485819 | + | 1368 | Protein_3319 | MHS family MFS transporter | - |
| O6R07_RS17080 (3485908) | 3485908..3487368 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| O6R07_RS17085 (3487403) | 3487403..3487606 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| O6R07_RS17090 (3487783) | 3487783..3488469 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| O6R07_RS17095 (3488558) | 3488558..3489304 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0 |