MGE detailed information
MGE type: Prophage MGE length: 37448 bp
Accession: NZ_CP114891 Location: 1702179..1739626 Organism: Escherichia coli strain CM2 Replicon: chromosome
Accession: NZ_CP114891 Location: 1702179..1739626 Organism: Escherichia coli strain CM2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O6Q44_RS08265 (1698078) | 1698078..1699298 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| O6Q44_RS08270 (1699423) | 1699423..1700118 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| O6Q44_RS08275 (1700071) | 1700071..1701363 | - | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| O6Q44_RS08280 (1701522) | 1701522..1702136 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| O6Q44_RS08285 (1702179) | 1702179..1703033 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| O6Q44_RS08290 (1703035) | 1703035..1703652 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| O6Q44_RS08295 (1703663) | 1703663..1706086 | - | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| O6Q44_RS08300 (1706147) | 1706147..1708573 | - | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| O6Q44_RS08305 (1708772) | 1708772..1709077 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| O6Q44_RS08310 (1709185) | 1709185..1709895 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| O6Q44_RS08315 (1709898) | 1709898..1710458 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| O6Q44_RS08320 (1710493) | 1710493..1710834 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| O6Q44_RS08325 (1710969) | 1710969..1711295 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| O6Q44_RS08330 (1711501) | 1711501..1712715 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| O6Q44_RS08335 (1712727) | 1712727..1713746 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| O6Q44_RS08340 (1713934) | 1713934..1714791 | - | 858 | Protein_1626 | Putative defective protein IntQ ; Integrase | Integrase |
| O6Q44_RS08345 (1714883) | 1714883..1716111 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| O6Q44_RS08350 (1716122) | 1716122..1716427 | - | 306 | Protein_1628 | DUF3596 domain-containing protein | - |
| O6Q44_RS08355 (1716441) | 1716441..1717136 | - | 696 | Protein_1629 | IS3 family transposase IS2 | Transposase |
| O6Q44_RS08360 (1717133) | 1717133..1717900 | - | 768 | Protein_1630 | exonuclease | - |
| O6Q44_RS08365 (1717993) | 1717993..1718184 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| O6Q44_RS08370 (1718181) | 1718181..1718369 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| O6Q44_RS08375 (1718937) | 1718937..1719155 | - | 219 | WP_001171942.1 | protein YdfC | - |
| O6Q44_RS08380 (1719185) | 1719185..1719313 | - | 129 | WP_000344964.1 | protein YdfB | - |
| O6Q44_RS08385 (1719315) | 1719315..1719470 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| O6Q44_RS08390 (1719637) | 1719637..1720044 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| O6Q44_RS08395 (1720128) | 1720128..1720358 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| O6Q44_RS08400 (1720342) | 1720342..1720620 | + | 279 | Protein_1638 | protein YdfX | - |
| O6Q44_RS08405 (1720655) | 1720655..1720804 | + | 150 | WP_011443592.1 | protein YdfW | - |
| O6Q44_RS08410 (1721241) | 1721241..1721573 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| O6Q44_RS08415 (1721776) | 1721776..1722081 | - | 306 | WP_001326990.1 | protein YdfV | - |
| O6Q44_RS08420 (1722106) | 1722106..1722345 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| O6Q44_RS08425 (1722345) | 1722345..1722632 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| O6Q44_RS08430 (1722704) | 1722704..1722859 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| O6Q44_RS08435 (1723076) | 1723076..1723327 | + | 252 | WP_000980994.1 | protein Rem | - |
| O6Q44_RS08440 (1723394) | 1723394..1723672 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| O6Q44_RS08445 (1723674) | 1723674..1724723 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| O6Q44_RS08450 (1724737) | 1724737..1725489 | + | 753 | WP_001047135.1 | antitermination protein | - |
| O6Q44_RS08455 (1725767) | 1725767..1725856 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| O6Q44_RS08460 (1725911) | 1725911..1726123 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| O6Q44_RS08465 (1726424) | 1726424..1726639 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| O6Q44_RS08470 (1727003) | 1727003..1727173 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| O6Q44_RS08475 (1727393) | 1727393..1727608 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| O6Q44_RS08480 (1727613) | 1727613..1727924 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| O6Q44_RS08485 (1727921) | 1727921..1728454 | + | 534 | WP_001092971.1 | lysozyme | - |
| O6Q44_RS08490 (1728451) | 1728451..1728948 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| O6Q44_RS08495 (1729311) | 1729311..1729523 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| O6Q44_RS08500 (1729534) | 1729534..1729722 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| O6Q44_RS08505 (1729725) | 1729725..1729790 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| O6Q44_RS08510 (1729869) | 1729869..1730024 | + | 156 | WP_001309517.1 | protein YnfN | - |
| O6Q44_RS08515 (1730196) | 1730196..1730369 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| O6Q44_RS08520 (1730521) | 1730521..1730931 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| O6Q44_RS08525 (1730989) | 1730989..1731222 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| O6Q44_RS08530 (1731611) | 1731611..1732180 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| O6Q44_RS08535 (1732131) | 1732131..1733093 | + | 963 | WP_001027733.1 | phage tail protein | - |
| O6Q44_RS08540 (1733093) | 1733093..1733668 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| O6Q44_RS08545 (1733766) | 1733766..1734356 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| O6Q44_RS08550 (1734673) | 1734673..1734906 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| O6Q44_RS08555 (1734975) | 1734975..1735088 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| O6Q44_RS08560 (1735609) | 1735609..1736976 | + | 1368 | Protein_1670 | MHS family MFS transporter | - |
| O6Q44_RS08565 (1737065) | 1737065..1738525 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| O6Q44_RS08570 (1738560) | 1738560..1738763 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| O6Q44_RS08575 (1738940) | 1738940..1739626 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| O6Q44_RS08580 (1739715) | 1739715..1740461 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| O6Q44_RS08585 (1740598) | 1740598..1742643 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| O6Q44_RS08590 (1742687) | 1742687..1743205 | - | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| O6Q44_RS08595 (1743481) | 1743481..1743873 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.002 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.002 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.002 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.002 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.002 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.002 |