MGE detailed information
MGE type: Prophage MGE length: 33462 bp
Accession: NZ_CP111008 Location: 2077738..2111199 Organism: Escherichia coli strain J53-p130 Replicon: chromosome
Accession: NZ_CP111008 Location: 2077738..2111199 Organism: Escherichia coli strain J53-p130 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ORI87_RS10060 (2073637) | 2073637..2074857 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| ORI87_RS10065 (2074982) | 2074982..2075677 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| ORI87_RS10070 (2075630) | 2075630..2076922 | - | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| ORI87_RS10075 (2077081) | 2077081..2077695 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| ORI87_RS10080 (2077738) | 2077738..2078592 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| ORI87_RS10085 (2078594) | 2078594..2079211 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| ORI87_RS10090 (2079222) | 2079222..2081645 | - | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| ORI87_RS10095 (2081706) | 2081706..2084132 | - | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| ORI87_RS10100 (2084331) | 2084331..2084636 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| ORI87_RS10105 (2084744) | 2084744..2085454 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| ORI87_RS10110 (2085457) | 2085457..2086017 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| ORI87_RS10115 (2086052) | 2086052..2086393 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| ORI87_RS10120 (2086528) | 2086528..2086854 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| ORI87_RS10125 (2087060) | 2087060..2088274 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| ORI87_RS10130 (2088286) | 2088286..2089305 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| ORI87_RS10135 (2089493) | 2089493..2090650 | - | 1158 | Protein_1978 | Putative defective protein IntQ ; Integrase | Integrase |
| ORI87_RS10140 (2090664) | 2090664..2091359 | - | 696 | Protein_1979 | IS3 family transposase IS2 | Transposase |
| ORI87_RS10145 (2091356) | 2091356..2092123 | - | 768 | Protein_1980 | exonuclease | - |
| ORI87_RS10150 (2092216) | 2092216..2092407 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| ORI87_RS10155 (2092404) | 2092404..2092592 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| ORI87_RS10160 (2093160) | 2093160..2093378 | - | 219 | WP_001171942.1 | protein YdfC | - |
| ORI87_RS10165 (2093408) | 2093408..2093536 | - | 129 | WP_000344964.1 | protein YdfB | - |
| ORI87_RS10170 (2093538) | 2093538..2093693 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| ORI87_RS10175 (2093860) | 2093860..2094267 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| ORI87_RS10180 (2094351) | 2094351..2094581 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| ORI87_RS10185 (2094565) | 2094565..2094843 | + | 279 | Protein_1988 | hypothetical protein | - |
| ORI87_RS10190 (2094878) | 2094878..2095027 | + | 150 | WP_011443592.1 | protein YdfW | - |
| ORI87_RS10195 (2095464) | 2095464..2095796 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| ORI87_RS10200 (2095999) | 2095999..2096304 | - | 306 | WP_001326990.1 | protein YdfV | - |
| ORI87_RS10205 (2096329) | 2096329..2096568 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| ORI87_RS10210 (2096568) | 2096568..2096855 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| ORI87_RS10215 (2096927) | 2096927..2097082 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| ORI87_RS10220 (2097299) | 2097299..2097550 | + | 252 | WP_000980994.1 | protein Rem | - |
| ORI87_RS10225 (2097617) | 2097617..2097895 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| ORI87_RS10230 (2097897) | 2097897..2098946 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| ORI87_RS10235 (2098960) | 2098960..2099712 | + | 753 | WP_001047135.1 | antitermination protein | - |
| ORI87_RS10240 (2099990) | 2099990..2100079 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| ORI87_RS10245 (2100134) | 2100134..2100346 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| ORI87_RS10250 (2100647) | 2100647..2100862 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| ORI87_RS10255 (2101226) | 2101226..2101396 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| ORI87_RS10260 (2101616) | 2101616..2101831 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| ORI87_RS10265 (2101836) | 2101836..2102147 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| ORI87_RS10270 (2102144) | 2102144..2102677 | + | 534 | WP_001092971.1 | lysozyme | - |
| ORI87_RS10275 (2102674) | 2102674..2103171 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| ORI87_RS10280 (2103534) | 2103534..2103746 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| ORI87_RS10285 (2103757) | 2103757..2103945 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| ORI87_RS10290 (2103948) | 2103948..2104013 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| ORI87_RS10295 (2104092) | 2104092..2104247 | + | 156 | WP_001309517.1 | protein YnfN | - |
| ORI87_RS10300 (2104419) | 2104419..2104592 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| ORI87_RS10305 (2104744) | 2104744..2105154 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| ORI87_RS10310 (2105212) | 2105212..2105445 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| ORI87_RS10315 (2105834) | 2105834..2106403 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| ORI87_RS10320 (2106354) | 2106354..2107316 | + | 963 | WP_001027733.1 | phage tail protein | - |
| ORI87_RS10325 (2107316) | 2107316..2107891 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| ORI87_RS10330 (2107989) | 2107989..2108579 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| ORI87_RS10335 (2108896) | 2108896..2109129 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| ORI87_RS10340 (2109198) | 2109198..2109311 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| ORI87_RS10345 (2109832) | 2109832..2111199 | + | 1368 | Protein_2020 | MHS family MFS transporter | - |
| ORI87_RS10350 (2111288) | 2111288..2112748 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| ORI87_RS10355 (2112783) | 2112783..2112986 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| ORI87_RS10360 (2113163) | 2113163..2113849 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| ORI87_RS10365 (2113938) | 2113938..2114684 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0 |