MGE detailed information
MGE type: Conjugative plasmid MGE length: 143596 bp
Accession: NZ_CP110118 Location: 1..143596 Organism: Escherichia coli strain 2-331 Replicon: plasmid p2-331_1
Accession: NZ_CP110118 Location: 1..143596 Organism: Escherichia coli strain 2-331 Replicon: plasmid p2-331_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
OMD12_RS24140 (1) | 1..978 | + | 978 | WP_000361612.1 | RepB family plasmid replication initiator protein | - |
OMD12_RS24145 (1263) | 1263..2003 | - | 741 | WP_001066942.1 | tyrosine-type recombinase/integrase | - |
OMD12_RS24150 (2124) | 2124..2306 | - | 183 | WP_042065278.1 | hypothetical protein | - |
OMD12_RS24155 (2373) | 2373..2662 | - | 290 | Protein_3 | type II toxin-antitoxin system RelE/ParE family toxin | - |
OMD12_RS24160 (2649) | 2649..2917 | - | 269 | Protein_4 | type II toxin-antitoxin system ParD family antitoxin | - |
OMD12_RS24165 (3449) | 3449..4618 | + | 1170 | WP_001072355.1 | hypothetical protein | - |
OMD12_RS24170 (4651) | 4651..4779 | + | 129 | Protein_6 | IS481 family transposase | - |
OMD12_RS24175 (4904) | 4904..5107 | - | 204 | Protein_7 | hypothetical protein | - |
OMD12_RS24180 (5213) | 5213..5488 | - | 276 | WP_000421272.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
OMD12_RS24185 (5488) | 5488..5772 | - | 285 | WP_001387467.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
OMD12_RS24190 (6377) | 6377..7129 | + | 753 | WP_000562172.1 | IclR family transcriptional regulator | - |
OMD12_RS24195 (7175) | 7175..8140 | - | 966 | WP_001022265.1 | 2-keto-3-deoxygluconate transporter | - |
OMD12_RS24200 (8173) | 8173..8553 | - | 381 | WP_000710783.1 | Rid family detoxifying hydrolase | - |
OMD12_RS24205 (8578) | 8578..9207 | - | 630 | WP_231528705.1 | dihydrodipicolinate synthase family protein | - |
OMD12_RS24210 (9251) | 9251..9883 | + | 633 | Protein_14 | sugar ABC transporter permease | - |
OMD12_RS24215 (9873) | 9873..10760 | + | 888 | WP_001271561.1 | carbohydrate ABC transporter permease | - |
OMD12_RS24220 (10771) | 10771..11595 | + | 825 | WP_000922702.1 | phosphodiesterase | - |
OMD12_RS24225 (11601) | 11601..12674 | + | 1074 | WP_033549814.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | VF |
OMD12_RS24230 (12667) | 12667..13977 | + | 1311 | WP_000476108.1 | ABC transporter substrate-binding protein | - |
OMD12_RS24235 (14036) | 14036..14344 | - | 309 | Protein_19 | IS4 family transposase ISEc13 | Transposase |
OMD12_RS24240 (14421) | 14421..14594 | - | 174 | WP_000338295.1 | Tn3 family transposase | - |
OMD12_RS24245 (14676) | 14676..15156 | - | 481 | Protein_21 | IS3 family transposase IS629 | Transposase |
OMD12_RS24250 (15240) | 15240..16748 | - | 1509 | WP_001189123.1 | group II intron reverse transcriptase/maturase | - |
OMD12_RS24255 (16787) | 16787..16909 | - | 123 | WP_001406634.1 | hypothetical protein | - |
OMD12_RS24260 (17421) | 17421..18142 | - | 722 | Protein_24 | IS3 family transposase IS629 | Transposase |
OMD12_RS24265 (18167) | 18167..18871 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
OMD12_RS24270 (18817) | 18817..19158 | - | 342 | WP_282850576.1 | IS6 family transposase IS15 | Transposase |
OMD12_RS24275 (19149) | 19149..19853 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
OMD12_RS24280 (19975) | 19975..20880 | + | 906 | WP_000219391.1 | hypothetical protein | ARG |
OMD12_RS24285 (20877) | 20877..22115 | + | 1239 | WP_000004159.1 | macrolide resistance MFS transporter Mrx(A) | - |
OMD12_RS24290 (22115) | 22115..22699 | + | 585 | WP_001137892.1 | macrolide-binding transcriptional repressor MphR(A) | - |
OMD12_RS24295 (23192) | 23192..23956 | - | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
OMD12_RS24300 (24258) | 24258..24815 | + | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
OMD12_RS24305 (24998) | 24998..25858 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
OMD12_RS24310 (26028) | 26028..26783 | + | 756 | WP_012372818.1 | 16S rRNA (guanine(1405)-N(7))-methyltransferase | ARG |
OMD12_RS24315 (26864) | 26864..27412 | - | 549 | WP_014342204.1 | cation:proton antiporter | - |
OMD12_RS24320 (27475) | 27475..27825 | + | 351 | Protein_36 | 60 kDa chaperonin | VF |
OMD12_RS24325 (28019) | 28019..28723 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
OMD12_RS24330 (28888) | 28888..29181 | + | 294 | Protein_38 | IS30 family transposase | - |
OMD12_RS24335 (29282) | 29282..30094 | + | 813 | WP_032495384.1 | Metallo-beta-lactamase type 2 | ARG |
OMD12_RS24340 (30098) | 30098..30463 | + | 366 | WP_004201167.1 | bleomycin binding protein Ble-MBL | - |
OMD12_RS24345 (30468) | 30468..31106 | + | 639 | WP_004201168.1 | phosphoribosylanthranilate isomerase | - |
OMD12_RS24350 (31117) | 31117..31674 | - | 558 | Protein_42 | twin-arginine translocation (TAT) pathway signal sequence domain protein | - |
OMD12_RS24355 (31774) | 31774..32148 | - | 375 | Protein_43 | protein-disulfide reductase DsbD family protein | - |
OMD12_RS24360 (32461) | 32461..34002 | - | 1542 | WP_000050481.1 | IS91 family transposase ISVsa3 | Transposase |
OMD12_RS24365 (34407) | 34407..35246 | - | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
OMD12_RS24370 (35240) | 35240..35587 | - | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
OMD12_RS24375 (35704) | 35704..36542 | - | 839 | Protein_47 | Streptomycin 3''-adenylyltransferase | ARG |
OMD12_RS24380 (36548) | 36548..36838 | - | 291 | WP_001336345.1 | DUF1010 domain-containing protein | - |
OMD12_RS24385 (36950) | 36950..37447 | - | 498 | WP_001083725.1 | IS1595 family transposase ISSsu9 | ARG |
OMD12_RS24390 (37592) | 37592..38515 | + | 924 | Protein_50 | IS91 family transposase ISAzo26 | Transposase |
OMD12_RS24395 (38580) | 38580..39284 | + | 705 | WP_001067834.1 | IS6 family transposase IS26 | Transposase |
OMD12_RS24400 (39342) | 39342..39872 | - | 531 | Protein_52 | histidine-type phosphatase | - |
OMD12_RS24405 (39994) | 39994..40479 | - | 486 | WP_000874189.1 | hypothetical protein | - |
OMD12_RS24410 (40504) | 40504..40989 | - | 486 | WP_001267177.1 | TlpA disulfide reductase family protein | - |
OMD12_RS24415 (40976) | 40976..41671 | - | 696 | WP_000117262.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
OMD12_RS24420 (41676) | 41676..42806 | - | 1131 | WP_000729220.1 | ABC transporter permease | - |
OMD12_RS24425 (42796) | 42796..44079 | - | 1284 | WP_000964653.1 | ABC transporter permease | - |
OMD12_RS24430 (44082) | 44082..45461 | - | 1380 | WP_000119836.1 | Fe-S-containing protein | - |
OMD12_RS24435 (45565) | 45565..46092 | - | 528 | WP_000178050.1 | iron transporter | - |
OMD12_RS24440 (46133) | 46133..48019 | - | 1887 | WP_000118029.1 | FTR1 family protein | - |
OMD12_RS24445 (48366) | 48366..49127 | - | 762 | WP_001225378.1 | Na(+)-translocating NADH-quinone reductase subunit C | - |
OMD12_RS24450 (49364) | 49364..49870 | - | 507 | WP_000949452.1 | protein disulfide oxidoreductase | - |
OMD12_RS24455 (49860) | 49860..50030 | - | 171 | Protein_63 | DsbA family protein | - |
OMD12_RS24460 (50168) | 50168..50281 | - | 114 | Protein_64 | IS6 family transposase | - |
OMD12_RS24465 (50372) | 50372..51223 | + | 852 | Protein_65 | IS4 family transposase IS10R | Transposase |
OMD12_RS24470 (51276) | 51276..51980 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
OMD12_RS24475 (52048) | 52048..53406 | + | 1359 | Protein_67 | Tn3 family transposase TnpA_TnAs1 | Transposase |
OMD12_RS24480 (53448) | 53448..53690 | + | 243 | WP_032140899.1 | hypothetical protein | - |
OMD12_RS24485 (53722) | 53722..54372 | - | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
OMD12_RS24490 (54478) | 54478..55677 | + | 1200 | WP_000804064.1 | Tetracycline resistance protein, class C | ARG |
OMD12_RS24495 (55709) | 55709..56593 | - | 885 | WP_000058717.1 | EamA family transporter | - |
OMD12_RS24500 (56731) | 56731..57123 | - | 393 | WP_001351729.1 | isochorismatase family cysteine hydrolase | - |
OMD12_RS24505 (57127) | 57127..57876 | + | 750 | Protein_73 | Tn3 family transposase TnpA_TnAs1 | Transposase |
OMD12_RS24510 (57900) | 57900..58505 | - | 606 | WP_000509965.1 | Tn3 family transposase TnpR_Tn5403 | Transposase |
OMD12_RS24515 (58600) | 58600..61497 | + | 2898 | WP_001553819.1 | Tn3 family transposase TnpA_Tn5403 | Transposase |
OMD12_RS24520 (61634) | 61634..62035 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
OMD12_RS24525 (61968) | 61968..62225 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
OMD12_RS24530 (62318) | 62318..62971 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
OMD12_RS24535 (63910) | 63910..64767 | - | 858 | WP_029702152.1 | incFII family plasmid replication initiator RepA | - |
OMD12_RS24540 (64760) | 64760..64834 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
OMD12_RS24545 (65070) | 65070..65327 | - | 258 | WP_000083833.1 | replication regulatory protein RepA | - |
OMD12_RS24550 (65611) | 65611..65760 | - | 150 | WP_001367749.1 | Hok/Gef family protein | Toxin Detail |
- (65804) | 65804..65865 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
- (65804) | 65804..65865 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
- (65804) | 65804..65865 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
- (65804) | 65804..65865 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
OMD12_RS24555 (66004) | 66004..66432 | - | 429 | WP_029702151.1 | hypothetical protein | - |
OMD12_RS24560 (66645) | 66645..67214 | - | 570 | WP_029702150.1 | DUF2726 domain-containing protein | - |
OMD12_RS24565 (67366) | 67366..67992 | - | 627 | WP_029702149.1 | NYN domain-containing protein | - |
OMD12_RS24570 (68404) | 68404..68613 | - | 210 | WP_039023209.1 | hypothetical protein | - |
OMD12_RS24575 (68744) | 68744..69304 | - | 561 | WP_001567328.1 | fertility inhibition protein FinO | - |
OMD12_RS24580 (69359) | 69359..70105 | - | 747 | WP_052273601.1 | conjugal transfer pilus acetylase TraX | - |
OMD12_RS24585 (70133) | 70133..70879 | - | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
OMD12_RS24590 (70894) | 70894..72435 | - | 1542 | WP_002431311.1 | IS21 family transposase ISEc12 | Transposase |
OMD12_RS24595 (72711) | 72711..77981 | - | 5271 | WP_039023145.1 | Multifunctional conjugation protein TraI | Relaxase |
OMD12_RS24600 (78063) | 78063..78290 | + | 228 | WP_039023146.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
OMD12_RS24605 (78290) | 78290..78688 | + | 399 | WP_039023147.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
OMD12_RS24610 (78697) | 78697..80895 | - | 2199 | WP_061856952.1 | type IV conjugative transfer system coupling protein TraD | - |
OMD12_RS24615 (81148) | 81148..81879 | - | 732 | WP_000850422.1 | conjugal transfer complement resistance protein TraT | - |
OMD12_RS24620 (81911) | 81911..82408 | - | 498 | WP_000605862.1 | entry exclusion protein | - |
OMD12_RS24625 (82427) | 82427..85246 | - | 2820 | WP_039023149.1 | conjugal transfer mating-pair stabilization protein TraG | - |
OMD12_RS24630 (85243) | 85243..86616 | - | 1374 | WP_039023150.1 | conjugal transfer pilus assembly protein TraH | - |
OMD12_RS24635 (86616) | 86616..86978 | - | 363 | WP_071550055.1 | P-type conjugative transfer protein TrbJ | - |
OMD12_RS24640 (86908) | 86908..87453 | - | 546 | WP_016236310.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
OMD12_RS24645 (87440) | 87440..87724 | - | 285 | WP_000624110.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
OMD12_RS24650 (87843) | 87843..88190 | - | 348 | WP_001287894.1 | conjugal transfer protein TrbA | - |
OMD12_RS24655 (88206) | 88206..88949 | - | 744 | WP_001030376.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
OMD12_RS24660 (88942) | 88942..89199 | - | 258 | WP_039023152.1 | conjugal transfer protein TrbE | - |
OMD12_RS24665 (89226) | 89226..91034 | - | 1809 | WP_039023153.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
OMD12_RS24670 (91031) | 91031..91669 | - | 639 | WP_001553832.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
OMD12_RS24675 (91678) | 91678..92670 | - | 993 | WP_001553833.1 | conjugal transfer pilus assembly protein TraU | - |
OMD12_RS24680 (92667) | 92667..93299 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
OMD12_RS24685 (93296) | 93296..93682 | - | 387 | WP_000099690.1 | type-F conjugative transfer system protein TrbI | - |
OMD12_RS24690 (93679) | 93679..96306 | - | 2628 | WP_001064264.1 | type IV secretion system protein TraC | - |
OMD12_RS24695 (96466) | 96466..96687 | - | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
OMD12_RS24700 (96822) | 96822..97337 | - | 516 | WP_000809832.1 | type IV conjugative transfer system lipoprotein TraV | - |
OMD12_RS24705 (97334) | 97334..97585 | - | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
OMD12_RS24710 (97578) | 97578..97898 | - | 321 | Protein_114 | conjugal transfer protein TrbD | - |
OMD12_RS24715 (97885) | 97885..98475 | - | 591 | WP_000002787.1 | conjugal transfer pilus-stabilizing protein TraP | - |
OMD12_RS24720 (98465) | 98465..99892 | - | 1428 | WP_001553836.1 | F-type conjugal transfer pilus assembly protein TraB | - |
OMD12_RS24725 (99892) | 99892..100620 | - | 729 | WP_001230813.1 | type-F conjugative transfer system secretin TraK | - |
OMD12_RS24730 (100607) | 100607..101173 | - | 567 | WP_000399790.1 | type IV conjugative transfer system protein TraE | - |
OMD12_RS24735 (101195) | 101195..101506 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
OMD12_RS24740 (101521) | 101521..101886 | - | 366 | WP_000340282.1 | type IV conjugative transfer system pilin TraA | - |
OMD12_RS24745 (101929) | 101929..102144 | - | 216 | WP_001352842.1 | conjugal transfer relaxosome protein TraY | - |
OMD12_RS24750 (102280) | 102280..102927 | - | 648 | WP_000332520.1 | conjugal transfer transcriptional regulator TraJ | - |
OMD12_RS24755 (103118) | 103118..103501 | - | 384 | WP_001063020.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
OMD12_RS24760 (103871) | 103871..104443 | + | 573 | WP_000949660.1 | hypothetical protein | VF |
OMD12_RS24765 (104739) | 104739..105560 | - | 822 | WP_001234465.1 | DUF932 domain-containing protein | - |
OMD12_RS24770 (105679) | 105679..105966 | - | 288 | WP_000107242.1 | hypothetical protein | - |
OMD12_RS24775 (105991) | 105991..106197 | - | 207 | WP_000275854.1 | hypothetical protein | - |
OMD12_RS24780 (106267) | 106267..106564 | + | 298 | Protein_128 | hypothetical protein | - |
OMD12_RS24785 (106865) | 106865..106990 | - | 126 | WP_096937776.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
OMD12_RS24790 (106932) | 106932..107081 | - | 150 | Protein_130 | DUF5431 family protein | - |
- (107088) | 107088..107286 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
- (107088) | 107088..107286 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
- (107088) | 107088..107286 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
- (107088) | 107088..107286 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
OMD12_RS24795 (107255) | 107255..107360 | - | 106 | Protein_131 | plasmid SOS inhibition protein A | - |
OMD12_RS24800 (107515) | 107515..107832 | + | 318 | Protein_132 | IS110 family transposase | - |
OMD12_RS24805 (108121) | 108121..108372 | - | 252 | Protein_133 | iron-containing alcohol dehydrogenase | - |
OMD12_RS24810 (108457) | 108457..108969 | - | 513 | WP_223350513.1 | potassium channel family protein | - |
OMD12_RS24820 (109850) | 109850..109954 | + | 105 | Protein_136 | thiosulfate reductase cytochrome B subunit | - |
OMD12_RS24825 (110200) | 110200..111594 | - | 1395 | WP_001037799.1 | carbohydrate porin | - |
OMD12_RS24830 (111789) | 111789..113219 | - | 1431 | WP_000813680.1 | glycoside hydrolase family 32 protein | - |
OMD12_RS24835 (113219) | 113219..114496 | - | 1278 | WP_001083369.1 | MFS transporter | - |
OMD12_RS24840 (114559) | 114559..116685 | - | 2127 | WP_000253905.1 | alpha-galactosidase | - |
OMD12_RS24845 (116781) | 116781..117791 | - | 1011 | WP_000053332.1 | substrate-binding domain-containing protein | - |
OMD12_RS24850 (117949) | 117949..118707 | - | 759 | Protein_142 | site-specific integrase | - |
OMD12_RS24855 (118798) | 118798..120026 | + | 1229 | WP_152924612.1 | IS3 family transposase IS2 | Transposase |
OMD12_RS24860 (120011) | 120011..120580 | + | 570 | WP_089634947.1 | hypothetical protein | - |
OMD12_RS24865 (122242) | 122242..123909 | + | 1668 | WP_012372796.1 | group II intron reverse transcriptase/maturase | - |
OMD12_RS24870 (124223) | 124223..124414 | - | 192 | WP_001027516.1 | hypothetical protein | - |
OMD12_RS24875 (124411) | 124411..124833 | - | 423 | WP_000271753.1 | DUF1380 family protein | - |
OMD12_RS24880 (124880) | 124880..125305 | - | 426 | WP_001198928.1 | antirestriction protein | - |
OMD12_RS24885 (125722) | 125722..126498 | - | 777 | WP_001753849.1 | hypothetical protein | - |
OMD12_RS24890 (126549) | 126549..127067 | - | 519 | WP_123325260.1 | DUF1380 family protein | - |
OMD12_RS24895 (126997) | 126997..127218 | - | 222 | WP_001104873.1 | hypothetical protein | - |
OMD12_RS24900 (127219) | 127219..127902 | - | 684 | WP_000086185.1 | DNA methylase | - |
OMD12_RS24905 (127979) | 127979..128290 | - | 312 | WP_011254640.1 | hypothetical protein | - |
OMD12_RS24910 (128287) | 128287..129189 | - | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
OMD12_RS24915 (130056) | 130056..131027 | - | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
OMD12_RS24920 (131027) | 131027..132193 | - | 1167 | WP_000772446.1 | hypothetical protein | VF |
OMD12_RS24925 (132781) | 132781..133536 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
OMD12_RS24930 (134310) | 134310..135116 | - | 807 | WP_000016982.1 | site-specific integrase | - |
OMD12_RS24935 (135117) | 135117..135422 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
OMD12_RS24940 (135424) | 135424..135642 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
OMD12_RS24945 (136276) | 136276..136473 | + | 198 | WP_000215657.1 | hypothetical protein | - |
OMD12_RS24950 (136470) | 136470..136754 | - | 285 | WP_000642771.1 | hypothetical protein | - |
OMD12_RS24955 (136774) | 136774..137907 | - | 1134 | WP_000545983.1 | DUF3800 domain-containing protein | - |
OMD12_RS24960 (138170) | 138170..140845 | - | 2676 | WP_282850570.1 | hypothetical protein | - |
OMD12_RS24970 (141871) | 141871..142841 | - | 971 | Protein_166 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
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