NZ_CP1101181..143596

MGE detailed information

MGE type: Conjugative plasmid        MGE length: 143596 bp
Accession: NZ_CP110118        Location: 1..143596         Organism: Escherichia coli strain 2-331       Replicon: plasmid p2-331_1


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OMD12_RS24140 (1) 1..978 + 978 WP_000361612.1 RepB family plasmid replication initiator protein -
OMD12_RS24145 (1263) 1263..2003 - 741 WP_001066942.1 tyrosine-type recombinase/integrase -
OMD12_RS24150 (2124) 2124..2306 - 183 WP_042065278.1 hypothetical protein -
OMD12_RS24155 (2373) 2373..2662 - 290 Protein_3 type II toxin-antitoxin system RelE/ParE family toxin -
OMD12_RS24160 (2649) 2649..2917 - 269 Protein_4 type II toxin-antitoxin system ParD family antitoxin -
OMD12_RS24165 (3449) 3449..4618 + 1170 WP_001072355.1 hypothetical protein -
OMD12_RS24170 (4651) 4651..4779 + 129 Protein_6 IS481 family transposase -
OMD12_RS24175 (4904) 4904..5107 - 204 Protein_7 hypothetical protein -
OMD12_RS24180 (5213) 5213..5488 - 276 WP_000421272.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin Detail
OMD12_RS24185 (5488) 5488..5772 - 285 WP_001387467.1 ribbon-helix-helix domain-containing protein Antitoxin Detail
OMD12_RS24190 (6377) 6377..7129 + 753 WP_000562172.1 IclR family transcriptional regulator -
OMD12_RS24195 (7175) 7175..8140 - 966 WP_001022265.1 2-keto-3-deoxygluconate transporter -
OMD12_RS24200 (8173) 8173..8553 - 381 WP_000710783.1 Rid family detoxifying hydrolase -
OMD12_RS24205 (8578) 8578..9207 - 630 WP_231528705.1 dihydrodipicolinate synthase family protein -
OMD12_RS24210 (9251) 9251..9883 + 633 Protein_14 sugar ABC transporter permease -
OMD12_RS24215 (9873) 9873..10760 + 888 WP_001271561.1 carbohydrate ABC transporter permease -
OMD12_RS24220 (10771) 10771..11595 + 825 WP_000922702.1 phosphodiesterase -
OMD12_RS24225 (11601) 11601..12674 + 1074 WP_033549814.1 sn-glycerol-3-phosphate import ATP-binding protein UgpC VF
OMD12_RS24230 (12667) 12667..13977 + 1311 WP_000476108.1 ABC transporter substrate-binding protein -
OMD12_RS24235 (14036) 14036..14344 - 309 Protein_19 IS4 family transposase ISEc13 Transposase
OMD12_RS24240 (14421) 14421..14594 - 174 WP_000338295.1 Tn3 family transposase -
OMD12_RS24245 (14676) 14676..15156 - 481 Protein_21 IS3 family transposase IS629 Transposase
OMD12_RS24250 (15240) 15240..16748 - 1509 WP_001189123.1 group II intron reverse transcriptase/maturase -
OMD12_RS24255 (16787) 16787..16909 - 123 WP_001406634.1 hypothetical protein -
OMD12_RS24260 (17421) 17421..18142 - 722 Protein_24 IS3 family transposase IS629 Transposase
OMD12_RS24265 (18167) 18167..18871 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
OMD12_RS24270 (18817) 18817..19158 - 342 WP_282850576.1 IS6 family transposase IS15 Transposase
OMD12_RS24275 (19149) 19149..19853 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
OMD12_RS24280 (19975) 19975..20880 + 906 WP_000219391.1 hypothetical protein ARG
OMD12_RS24285 (20877) 20877..22115 + 1239 WP_000004159.1 macrolide resistance MFS transporter Mrx(A) -
OMD12_RS24290 (22115) 22115..22699 + 585 WP_001137892.1 macrolide-binding transcriptional repressor MphR(A) -
OMD12_RS24295 (23192) 23192..23956 - 765 WP_001389365.1 IS6 family transposase IS6100 Transposase
OMD12_RS24300 (24258) 24258..24815 + 558 WP_001235713.1 Tn3 family transposase TnpR_Tn3 Transposase
OMD12_RS24305 (24998) 24998..25858 + 861 WP_000027057.1 Beta-lactamase TEM ARG
OMD12_RS24310 (26028) 26028..26783 + 756 WP_012372818.1 16S rRNA (guanine(1405)-N(7))-methyltransferase ARG
OMD12_RS24315 (26864) 26864..27412 - 549 WP_014342204.1 cation:proton antiporter -
OMD12_RS24320 (27475) 27475..27825 + 351 Protein_36 60 kDa chaperonin VF
OMD12_RS24325 (28019) 28019..28723 - 705 WP_001067855.1 IS6 family transposase IS26 Transposase
OMD12_RS24330 (28888) 28888..29181 + 294 Protein_38 IS30 family transposase -
OMD12_RS24335 (29282) 29282..30094 + 813 WP_032495384.1 Metallo-beta-lactamase type 2 ARG
OMD12_RS24340 (30098) 30098..30463 + 366 WP_004201167.1 bleomycin binding protein Ble-MBL -
OMD12_RS24345 (30468) 30468..31106 + 639 WP_004201168.1 phosphoribosylanthranilate isomerase -
OMD12_RS24350 (31117) 31117..31674 - 558 Protein_42 twin-arginine translocation (TAT) pathway signal sequence domain protein -
OMD12_RS24355 (31774) 31774..32148 - 375 Protein_43 protein-disulfide reductase DsbD family protein -
OMD12_RS24360 (32461) 32461..34002 - 1542 WP_000050481.1 IS91 family transposase ISVsa3 Transposase
OMD12_RS24365 (34407) 34407..35246 - 840 WP_000259031.1 Dihydropteroate synthase ARG
OMD12_RS24370 (35240) 35240..35587 - 348 WP_000679427.1 Multidrug transporter EmrE ARG
OMD12_RS24375 (35704) 35704..36542 - 839 Protein_47 Streptomycin 3''-adenylyltransferase ARG
OMD12_RS24380 (36548) 36548..36838 - 291 WP_001336345.1 DUF1010 domain-containing protein -
OMD12_RS24385 (36950) 36950..37447 - 498 WP_001083725.1 IS1595 family transposase ISSsu9 ARG
OMD12_RS24390 (37592) 37592..38515 + 924 Protein_50 IS91 family transposase ISAzo26 Transposase
OMD12_RS24395 (38580) 38580..39284 + 705 WP_001067834.1 IS6 family transposase IS26 Transposase
OMD12_RS24400 (39342) 39342..39872 - 531 Protein_52 histidine-type phosphatase -
OMD12_RS24405 (39994) 39994..40479 - 486 WP_000874189.1 hypothetical protein -
OMD12_RS24410 (40504) 40504..40989 - 486 WP_001267177.1 TlpA disulfide reductase family protein -
OMD12_RS24415 (40976) 40976..41671 - 696 WP_000117262.1 Lipoprotein-releasing system ATP-binding protein LolD VF
OMD12_RS24420 (41676) 41676..42806 - 1131 WP_000729220.1 ABC transporter permease -
OMD12_RS24425 (42796) 42796..44079 - 1284 WP_000964653.1 ABC transporter permease -
OMD12_RS24430 (44082) 44082..45461 - 1380 WP_000119836.1 Fe-S-containing protein -
OMD12_RS24435 (45565) 45565..46092 - 528 WP_000178050.1 iron transporter -
OMD12_RS24440 (46133) 46133..48019 - 1887 WP_000118029.1 FTR1 family protein -
OMD12_RS24445 (48366) 48366..49127 - 762 WP_001225378.1 Na(+)-translocating NADH-quinone reductase subunit C -
OMD12_RS24450 (49364) 49364..49870 - 507 WP_000949452.1 protein disulfide oxidoreductase -
OMD12_RS24455 (49860) 49860..50030 - 171 Protein_63 DsbA family protein -
OMD12_RS24460 (50168) 50168..50281 - 114 Protein_64 IS6 family transposase -
OMD12_RS24465 (50372) 50372..51223 + 852 Protein_65 IS4 family transposase IS10R Transposase
OMD12_RS24470 (51276) 51276..51980 - 705 WP_001067855.1 IS6 family transposase IS26 Transposase
OMD12_RS24475 (52048) 52048..53406 + 1359 Protein_67 Tn3 family transposase TnpA_TnAs1 Transposase
OMD12_RS24480 (53448) 53448..53690 + 243 WP_032140899.1 hypothetical protein -
OMD12_RS24485 (53722) 53722..54372 - 651 WP_000164043.1 tetracycline resistance transcriptional repressor TetR(A) -
OMD12_RS24490 (54478) 54478..55677 + 1200 WP_000804064.1 Tetracycline resistance protein, class C ARG
OMD12_RS24495 (55709) 55709..56593 - 885 WP_000058717.1 EamA family transporter -
OMD12_RS24500 (56731) 56731..57123 - 393 WP_001351729.1 isochorismatase family cysteine hydrolase -
OMD12_RS24505 (57127) 57127..57876 + 750 Protein_73 Tn3 family transposase TnpA_TnAs1 Transposase
OMD12_RS24510 (57900) 57900..58505 - 606 WP_000509965.1 Tn3 family transposase TnpR_Tn5403 Transposase
OMD12_RS24515 (58600) 58600..61497 + 2898 WP_001553819.1 Tn3 family transposase TnpA_Tn5403 Transposase
OMD12_RS24520 (61634) 61634..62035 - 402 WP_001398199.1 type II toxin-antitoxin system toxin endoribonuclease PemK -
OMD12_RS24525 (61968) 61968..62225 - 258 WP_000557619.1 type II toxin-antitoxin system antitoxin PemI -
OMD12_RS24530 (62318) 62318..62971 - 654 WP_000616807.1 CPBP family intramembrane metalloprotease -
OMD12_RS24535 (63910) 63910..64767 - 858 WP_029702152.1 incFII family plasmid replication initiator RepA -
OMD12_RS24540 (64760) 64760..64834 - 75 WP_001365705.1 RepA leader peptide Tap -
OMD12_RS24545 (65070) 65070..65327 - 258 WP_000083833.1 replication regulatory protein RepA -
OMD12_RS24550 (65611) 65611..65760 - 150 WP_001367749.1 Hok/Gef family protein Toxin Detail
- (65804) 65804..65865 + 62 NuclAT_1 - Antitoxin Detail
- (65804) 65804..65865 + 62 NuclAT_1 - Antitoxin Detail
- (65804) 65804..65865 + 62 NuclAT_1 - Antitoxin Detail
- (65804) 65804..65865 + 62 NuclAT_1 - Antitoxin Detail
OMD12_RS24555 (66004) 66004..66432 - 429 WP_029702151.1 hypothetical protein -
OMD12_RS24560 (66645) 66645..67214 - 570 WP_029702150.1 DUF2726 domain-containing protein -
OMD12_RS24565 (67366) 67366..67992 - 627 WP_029702149.1 NYN domain-containing protein -
OMD12_RS24570 (68404) 68404..68613 - 210 WP_039023209.1 hypothetical protein -
OMD12_RS24575 (68744) 68744..69304 - 561 WP_001567328.1 fertility inhibition protein FinO -
OMD12_RS24580 (69359) 69359..70105 - 747 WP_052273601.1 conjugal transfer pilus acetylase TraX -
OMD12_RS24585 (70133) 70133..70879 - 747 WP_001016257.1 IS21 family transposase ISEc12 Transposase
OMD12_RS24590 (70894) 70894..72435 - 1542 WP_002431311.1 IS21 family transposase ISEc12 Transposase
OMD12_RS24595 (72711) 72711..77981 - 5271 WP_039023145.1 Multifunctional conjugation protein TraI Relaxase
OMD12_RS24600 (78063) 78063..78290 + 228 WP_039023146.1 toxin-antitoxin system antitoxin VapB Antitoxin Detail
OMD12_RS24605 (78290) 78290..78688 + 399 WP_039023147.1 type II toxin-antitoxin system VapC family toxin Toxin Detail
OMD12_RS24610 (78697) 78697..80895 - 2199 WP_061856952.1 type IV conjugative transfer system coupling protein TraD -
OMD12_RS24615 (81148) 81148..81879 - 732 WP_000850422.1 conjugal transfer complement resistance protein TraT -
OMD12_RS24620 (81911) 81911..82408 - 498 WP_000605862.1 entry exclusion protein -
OMD12_RS24625 (82427) 82427..85246 - 2820 WP_039023149.1 conjugal transfer mating-pair stabilization protein TraG -
OMD12_RS24630 (85243) 85243..86616 - 1374 WP_039023150.1 conjugal transfer pilus assembly protein TraH -
OMD12_RS24635 (86616) 86616..86978 - 363 WP_071550055.1 P-type conjugative transfer protein TrbJ -
OMD12_RS24640 (86908) 86908..87453 - 546 WP_016236310.1 type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB -
OMD12_RS24645 (87440) 87440..87724 - 285 WP_000624110.1 type-F conjugative transfer system pilin chaperone TraQ -
OMD12_RS24650 (87843) 87843..88190 - 348 WP_001287894.1 conjugal transfer protein TrbA -
OMD12_RS24655 (88206) 88206..88949 - 744 WP_001030376.1 type-F conjugative transfer system pilin assembly protein TraF -
OMD12_RS24660 (88942) 88942..89199 - 258 WP_039023152.1 conjugal transfer protein TrbE -
OMD12_RS24665 (89226) 89226..91034 - 1809 WP_039023153.1 type-F conjugative transfer system mating-pair stabilization protein TraN -
OMD12_RS24670 (91031) 91031..91669 - 639 WP_001553832.1 type-F conjugative transfer system pilin assembly protein TrbC -
OMD12_RS24675 (91678) 91678..92670 - 993 WP_001553833.1 conjugal transfer pilus assembly protein TraU -
OMD12_RS24680 (92667) 92667..93299 - 633 WP_001203720.1 type-F conjugative transfer system protein TraW -
OMD12_RS24685 (93296) 93296..93682 - 387 WP_000099690.1 type-F conjugative transfer system protein TrbI -
OMD12_RS24690 (93679) 93679..96306 - 2628 WP_001064264.1 type IV secretion system protein TraC -
OMD12_RS24695 (96466) 96466..96687 - 222 WP_001278692.1 conjugal transfer protein TraR -
OMD12_RS24700 (96822) 96822..97337 - 516 WP_000809832.1 type IV conjugative transfer system lipoprotein TraV -
OMD12_RS24705 (97334) 97334..97585 - 252 WP_001038342.1 conjugal transfer protein TrbG -
OMD12_RS24710 (97578) 97578..97898 - 321 Protein_114 conjugal transfer protein TrbD -
OMD12_RS24715 (97885) 97885..98475 - 591 WP_000002787.1 conjugal transfer pilus-stabilizing protein TraP -
OMD12_RS24720 (98465) 98465..99892 - 1428 WP_001553836.1 F-type conjugal transfer pilus assembly protein TraB -
OMD12_RS24725 (99892) 99892..100620 - 729 WP_001230813.1 type-F conjugative transfer system secretin TraK -
OMD12_RS24730 (100607) 100607..101173 - 567 WP_000399790.1 type IV conjugative transfer system protein TraE -
OMD12_RS24735 (101195) 101195..101506 - 312 WP_000012106.1 type IV conjugative transfer system protein TraL -
OMD12_RS24740 (101521) 101521..101886 - 366 WP_000340282.1 type IV conjugative transfer system pilin TraA -
OMD12_RS24745 (101929) 101929..102144 - 216 WP_001352842.1 conjugal transfer relaxosome protein TraY -
OMD12_RS24750 (102280) 102280..102927 - 648 WP_000332520.1 conjugal transfer transcriptional regulator TraJ -
OMD12_RS24755 (103118) 103118..103501 - 384 WP_001063020.1 conjugal transfer relaxosome DNA-binding protein TraM -
OMD12_RS24760 (103871) 103871..104443 + 573 WP_000949660.1 hypothetical protein VF
OMD12_RS24765 (104739) 104739..105560 - 822 WP_001234465.1 DUF932 domain-containing protein -
OMD12_RS24770 (105679) 105679..105966 - 288 WP_000107242.1 hypothetical protein -
OMD12_RS24775 (105991) 105991..106197 - 207 WP_000275854.1 hypothetical protein -
OMD12_RS24780 (106267) 106267..106564 + 298 Protein_128 hypothetical protein -
OMD12_RS24785 (106865) 106865..106990 - 126 WP_096937776.1 type I toxin-antitoxin system Hok family toxin Toxin Detail
OMD12_RS24790 (106932) 106932..107081 - 150 Protein_130 DUF5431 family protein -
- (107088) 107088..107286 - 199 NuclAT_0 - Antitoxin Detail
- (107088) 107088..107286 - 199 NuclAT_0 - Antitoxin Detail
- (107088) 107088..107286 - 199 NuclAT_0 - Antitoxin Detail
- (107088) 107088..107286 - 199 NuclAT_0 - Antitoxin Detail
OMD12_RS24795 (107255) 107255..107360 - 106 Protein_131 plasmid SOS inhibition protein A -
OMD12_RS24800 (107515) 107515..107832 + 318 Protein_132 IS110 family transposase -
OMD12_RS24805 (108121) 108121..108372 - 252 Protein_133 iron-containing alcohol dehydrogenase -
OMD12_RS24810 (108457) 108457..108969 - 513 WP_223350513.1 potassium channel family protein -
OMD12_RS24820 (109850) 109850..109954 + 105 Protein_136 thiosulfate reductase cytochrome B subunit -
OMD12_RS24825 (110200) 110200..111594 - 1395 WP_001037799.1 carbohydrate porin -
OMD12_RS24830 (111789) 111789..113219 - 1431 WP_000813680.1 glycoside hydrolase family 32 protein -
OMD12_RS24835 (113219) 113219..114496 - 1278 WP_001083369.1 MFS transporter -
OMD12_RS24840 (114559) 114559..116685 - 2127 WP_000253905.1 alpha-galactosidase -
OMD12_RS24845 (116781) 116781..117791 - 1011 WP_000053332.1 substrate-binding domain-containing protein -
OMD12_RS24850 (117949) 117949..118707 - 759 Protein_142 site-specific integrase -
OMD12_RS24855 (118798) 118798..120026 + 1229 WP_152924612.1 IS3 family transposase IS2 Transposase
OMD12_RS24860 (120011) 120011..120580 + 570 WP_089634947.1 hypothetical protein -
OMD12_RS24865 (122242) 122242..123909 + 1668 WP_012372796.1 group II intron reverse transcriptase/maturase -
OMD12_RS24870 (124223) 124223..124414 - 192 WP_001027516.1 hypothetical protein -
OMD12_RS24875 (124411) 124411..124833 - 423 WP_000271753.1 DUF1380 family protein -
OMD12_RS24880 (124880) 124880..125305 - 426 WP_001198928.1 antirestriction protein -
OMD12_RS24885 (125722) 125722..126498 - 777 WP_001753849.1 hypothetical protein -
OMD12_RS24890 (126549) 126549..127067 - 519 WP_123325260.1 DUF1380 family protein -
OMD12_RS24895 (126997) 126997..127218 - 222 WP_001104873.1 hypothetical protein -
OMD12_RS24900 (127219) 127219..127902 - 684 WP_000086185.1 DNA methylase -
OMD12_RS24905 (127979) 127979..128290 - 312 WP_011254640.1 hypothetical protein -
OMD12_RS24910 (128287) 128287..129189 - 903 WP_001348615.1 DUF1281 domain-containing protein -
OMD12_RS24915 (130056) 130056..131027 - 972 WP_000817036.1 ParB/RepB/Spo0J family plasmid partition protein -
OMD12_RS24920 (131027) 131027..132193 - 1167 WP_000772446.1 hypothetical protein VF
OMD12_RS24925 (132781) 132781..133536 - 756 WP_000852146.1 replication initiation protein RepE -
OMD12_RS24930 (134310) 134310..135116 - 807 WP_000016982.1 site-specific integrase -
OMD12_RS24935 (135117) 135117..135422 - 306 WP_001159868.1 type II toxin-antitoxin system toxin CcdB Toxin Detail
OMD12_RS24940 (135424) 135424..135642 - 219 WP_000813634.1 type II toxin-antitoxin system antitoxin CcdA Antitoxin Detail
OMD12_RS24945 (136276) 136276..136473 + 198 WP_000215657.1 hypothetical protein -
OMD12_RS24950 (136470) 136470..136754 - 285 WP_000642771.1 hypothetical protein -
OMD12_RS24955 (136774) 136774..137907 - 1134 WP_000545983.1 DUF3800 domain-containing protein -
OMD12_RS24960 (138170) 138170..140845 - 2676 WP_282850570.1 hypothetical protein -
OMD12_RS24970 (141871) 141871..142841 - 971 Protein_166 hypothetical protein -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance