MGE detailed information
MGE type: Prophage MGE length: 34798 bp
Accession: NZ_CP110018 Location: 1718651..1753448 Organism: Escherichia coli strain DH10B Replicon: chromosome
Accession: NZ_CP110018 Location: 1718651..1753448 Organism: Escherichia coli strain DH10B Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OLR78_RS08460 (1715166) | 1715166..1715912 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| OLR78_RS08465 (1716001) | 1716001..1716687 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| OLR78_RS08470 (1716864) | 1716864..1717067 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| OLR78_RS08475 (1717102) | 1717102..1718562 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| OLR78_RS08480 (1718651) | 1718651..1720018 | - | 1368 | Protein_1658 | MHS family MFS transporter | - |
| OLR78_RS08485 (1720539) | 1720539..1720652 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| OLR78_RS08490 (1720721) | 1720721..1720954 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| OLR78_RS08495 (1721271) | 1721271..1721861 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| OLR78_RS08500 (1721959) | 1721959..1722534 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| OLR78_RS08505 (1722534) | 1722534..1723496 | - | 963 | WP_001027733.1 | phage tail protein | - |
| OLR78_RS08510 (1723447) | 1723447..1724016 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| OLR78_RS08515 (1724405) | 1724405..1724638 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| OLR78_RS08520 (1724696) | 1724696..1725106 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| OLR78_RS08525 (1725258) | 1725258..1725431 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| OLR78_RS08530 (1725603) | 1725603..1725758 | - | 156 | WP_001309517.1 | protein YnfN | - |
| OLR78_RS08535 (1725837) | 1725837..1725902 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| OLR78_RS08540 (1725905) | 1725905..1726093 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| OLR78_RS08545 (1726104) | 1726104..1726316 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| OLR78_RS08550 (1726679) | 1726679..1727176 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| OLR78_RS08555 (1727173) | 1727173..1727706 | - | 534 | WP_001092971.1 | lysozyme | - |
| OLR78_RS08560 (1727703) | 1727703..1728014 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| OLR78_RS08565 (1728019) | 1728019..1728234 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| OLR78_RS08570 (1728454) | 1728454..1728624 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| OLR78_RS08575 (1728988) | 1728988..1729203 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| OLR78_RS08580 (1729504) | 1729504..1729716 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| OLR78_RS08585 (1729771) | 1729771..1729860 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| OLR78_RS08590 (1730138) | 1730138..1730890 | - | 753 | WP_001047135.1 | antitermination protein | - |
| OLR78_RS08595 (1730904) | 1730904..1731953 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| OLR78_RS08600 (1731955) | 1731955..1732233 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| OLR78_RS08605 (1732300) | 1732300..1732551 | - | 252 | WP_000980994.1 | protein Rem | - |
| OLR78_RS08610 (1732768) | 1732768..1732923 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| OLR78_RS08615 (1732995) | 1732995..1733282 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| OLR78_RS08620 (1733282) | 1733282..1733521 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| OLR78_RS08625 (1733546) | 1733546..1733851 | + | 306 | WP_001326990.1 | protein YdfV | - |
| OLR78_RS08630 (1734054) | 1734054..1734386 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| OLR78_RS08635 (1734823) | 1734823..1734972 | - | 150 | WP_011443592.1 | protein YdfW | - |
| OLR78_RS08640 (1735007) | 1735007..1735285 | - | 279 | Protein_1690 | protein YdfX | - |
| OLR78_RS08645 (1735269) | 1735269..1735499 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| OLR78_RS08650 (1735583) | 1735583..1735990 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| OLR78_RS08655 (1736157) | 1736157..1736312 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| OLR78_RS08660 (1736314) | 1736314..1736442 | + | 129 | WP_000344964.1 | protein YdfB | - |
| OLR78_RS08665 (1736472) | 1736472..1736690 | + | 219 | WP_001171942.1 | protein YdfC | - |
| OLR78_RS08670 (1737258) | 1737258..1737446 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| OLR78_RS08675 (1737443) | 1737443..1737634 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| OLR78_RS08680 (1737727) | 1737727..1738494 | + | 768 | Protein_1698 | exonuclease | - |
| OLR78_RS08685 (1738491) | 1738491..1739186 | + | 696 | Protein_1699 | IS3 family transposase IS2 | Transposase |
| OLR78_RS08690 (1739200) | 1739200..1739505 | + | 306 | Protein_1700 | DUF3596 domain-containing protein | - |
| OLR78_RS08700 (1740836) | 1740836..1741693 | + | 858 | Protein_1702 | Putative defective protein IntQ ; Integrase | Integrase |
| OLR78_RS08705 (1741881) | 1741881..1742900 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| OLR78_RS08710 (1742912) | 1742912..1744126 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| OLR78_RS08715 (1744332) | 1744332..1744658 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| OLR78_RS08720 (1744793) | 1744793..1745134 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| OLR78_RS08725 (1745169) | 1745169..1745729 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| OLR78_RS08730 (1745732) | 1745732..1746442 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| OLR78_RS08735 (1746550) | 1746550..1746855 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| OLR78_RS08740 (1747054) | 1747054..1749480 | + | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| OLR78_RS08745 (1749541) | 1749541..1751964 | + | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| OLR78_RS08750 (1751975) | 1751975..1752592 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| OLR78_RS08755 (1752594) | 1752594..1753448 | + | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| OLR78_RS08760 (1753491) | 1753491..1754105 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| OLR78_RS08765 (1754264) | 1754264..1755556 | + | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| OLR78_RS08770 (1755509) | 1755509..1756204 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| OLR78_RS08775 (1756329) | 1756329..1757549 | - | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0 |