MGE detailed information
MGE type: Prophage MGE length: 41695 bp
Accession: NZ_CP106995 Location: 2226870..2268564 Organism: Escherichia coli strain SY22B3 Replicon: chromosome
Accession: NZ_CP106995 Location: 2226870..2268564 Organism: Escherichia coli strain SY22B3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OFB03_RS10785 (2222769) | 2222769..2223989 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| OFB03_RS10790 (2224114) | 2224114..2224809 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| OFB03_RS10795 (2224762) | 2224762..2226054 | - | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| OFB03_RS10800 (2226213) | 2226213..2226827 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| OFB03_RS10805 (2226870) | 2226870..2227724 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| OFB03_RS10810 (2227726) | 2227726..2228343 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| OFB03_RS10815 (2228354) | 2228354..2230777 | - | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| OFB03_RS10820 (2230838) | 2230838..2233264 | - | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| OFB03_RS10825 (2233463) | 2233463..2233768 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| OFB03_RS10830 (2233876) | 2233876..2234586 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| OFB03_RS10835 (2234589) | 2234589..2235149 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| OFB03_RS10840 (2235184) | 2235184..2235525 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| OFB03_RS10845 (2235660) | 2235660..2235986 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| OFB03_RS10850 (2236192) | 2236192..2237406 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| OFB03_RS10855 (2237418) | 2237418..2238437 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| OFB03_RS10860 (2238625) | 2238625..2239482 | - | 858 | Protein_2121 | Putative defective protein IntQ ; Integrase | Integrase |
| OFB03_RS10865 (2239574) | 2239574..2240802 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| OFB03_RS10870 (2240813) | 2240813..2241118 | - | 306 | Protein_2123 | DUF3596 domain-containing protein | - |
| OFB03_RS10875 (2241132) | 2241132..2241827 | - | 696 | Protein_2124 | IS3 family transposase IS2 | Transposase |
| OFB03_RS10880 (2241824) | 2241824..2242591 | - | 768 | Protein_2125 | exonuclease | - |
| OFB03_RS10885 (2242684) | 2242684..2242875 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| OFB03_RS10890 (2242872) | 2242872..2243060 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| OFB03_RS10895 (2243628) | 2243628..2243846 | - | 219 | WP_001171942.1 | protein YdfC | - |
| OFB03_RS10900 (2243876) | 2243876..2244004 | - | 129 | WP_000344964.1 | protein YdfB | - |
| OFB03_RS10905 (2244006) | 2244006..2244161 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| OFB03_RS10910 (2244328) | 2244328..2244735 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| OFB03_RS10915 (2244819) | 2244819..2245049 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| OFB03_RS10920 (2245033) | 2245033..2245311 | + | 279 | Protein_2133 | protein YdfX | - |
| OFB03_RS10925 (2245346) | 2245346..2245495 | + | 150 | WP_011443592.1 | protein YdfW | - |
| OFB03_RS10930 (2245932) | 2245932..2246264 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| OFB03_RS10935 (2246467) | 2246467..2246772 | - | 306 | WP_001326990.1 | protein YdfV | - |
| OFB03_RS10940 (2246797) | 2246797..2247036 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| OFB03_RS10945 (2247036) | 2247036..2247323 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| OFB03_RS10950 (2247395) | 2247395..2247550 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| OFB03_RS10955 (2247767) | 2247767..2248018 | + | 252 | WP_000980994.1 | protein Rem | - |
| OFB03_RS10960 (2248085) | 2248085..2248363 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| OFB03_RS10965 (2248365) | 2248365..2249414 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| OFB03_RS10970 (2249428) | 2249428..2250180 | + | 753 | WP_001047135.1 | antitermination protein | - |
| OFB03_RS10975 (2250458) | 2250458..2250547 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| OFB03_RS10980 (2250602) | 2250602..2250814 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| OFB03_RS10985 (2251115) | 2251115..2251330 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| OFB03_RS10990 (2251694) | 2251694..2251864 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| OFB03_RS10995 (2252084) | 2252084..2252299 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| OFB03_RS11000 (2252304) | 2252304..2252615 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| OFB03_RS11005 (2252612) | 2252612..2253145 | + | 534 | WP_001092971.1 | lysozyme | - |
| OFB03_RS11010 (2253142) | 2253142..2253639 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| OFB03_RS11015 (2254002) | 2254002..2254214 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| OFB03_RS11020 (2254225) | 2254225..2254413 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| OFB03_RS11025 (2254416) | 2254416..2254481 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| OFB03_RS11030 (2254560) | 2254560..2254715 | + | 156 | WP_001309517.1 | protein YnfN | - |
| OFB03_RS11035 (2254887) | 2254887..2255060 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| OFB03_RS11040 (2255212) | 2255212..2255622 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| OFB03_RS11045 (2255680) | 2255680..2255913 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| OFB03_RS11050 (2256302) | 2256302..2256871 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| OFB03_RS11055 (2256822) | 2256822..2257784 | + | 963 | WP_001027733.1 | phage tail protein | - |
| OFB03_RS11060 (2257784) | 2257784..2258359 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| OFB03_RS11065 (2258457) | 2258457..2259047 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| OFB03_RS11070 (2259364) | 2259364..2259597 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| OFB03_RS11075 (2259666) | 2259666..2259779 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| OFB03_RS11080 (2260300) | 2260300..2261667 | + | 1368 | Protein_2165 | MHS family MFS transporter | - |
| OFB03_RS11085 (2261756) | 2261756..2263216 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| OFB03_RS11090 (2263251) | 2263251..2263454 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| OFB03_RS11095 (2263631) | 2263631..2264317 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| OFB03_RS11100 (2264406) | 2264406..2265152 | - | 747 | WP_000636571.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| OFB03_RS11105 (2265289) | 2265289..2267334 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| OFB03_RS11110 (2267378) | 2267378..2267896 | - | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| OFB03_RS11115 (2268172) | 2268172..2268564 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| OFB03_RS11120 (2268819) | 2268819..2269709 | + | 891 | WP_000592814.1 | diguanylate cyclase DgcZ | - |
| OFB03_RS11125 (2269824) | 2269824..2269928 | - | 105 | WP_211180496.1 | protein MgtT | - |
| OFB03_RS11130 (2269928) | 2269928..2270023 | - | 96 | WP_000901367.1 | protein MgtS | - |
| OFB03_RS11135 (2270150) | 2270150..2271337 | - | 1188 | WP_001054204.1 | efflux MFS transporter YdeE | - |
| OFB03_RS11140 (2271532) | 2271532..2272431 | + | 900 | WP_000087187.1 | O-acetylserine/cysteine exporter | - |
| OFB03_RS11145 (2272462) | 2272462..2272680 | - | 219 | WP_000803657.1 | multiple antibiotic resistance protein MarB | - |
| OFB03_RS11150 (2272712) | 2272712..2273095 | - | 384 | WP_000091199.1 | MDR efflux pump AcrAB transcriptional activator MarA | - |
| OFB03_RS11155 (2273115) | 2273115..2273549 | - | 435 | WP_000843414.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.005 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.005 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.004 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.005 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.005 | |
| Escherichia coli C | Prophage | TA75071 | NZ_CP020543 | 2249542..2301270 | 0.009 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.005 |