MGE detailed information
MGE type: Prophage MGE length: 33462 bp
Accession: NZ_CP104326 Location: 2221107..2254568 Organism: Escherichia coli strain THB42-F1 Replicon: chromosome
Accession: NZ_CP104326 Location: 2221107..2254568 Organism: Escherichia coli strain THB42-F1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N0470_RS10695 (2217006) | 2217006..2218226 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| N0470_RS10700 (2218351) | 2218351..2219046 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| N0470_RS10705 (2218999) | 2218999..2220291 | - | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| N0470_RS10710 (2220450) | 2220450..2221064 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| N0470_RS10715 (2221107) | 2221107..2221961 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| N0470_RS10720 (2221963) | 2221963..2222580 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| N0470_RS10725 (2222591) | 2222591..2225014 | - | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| N0470_RS10730 (2225075) | 2225075..2227501 | - | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| N0470_RS10735 (2227700) | 2227700..2228005 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| N0470_RS10740 (2228113) | 2228113..2228823 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| N0470_RS10745 (2228826) | 2228826..2229386 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| N0470_RS10750 (2229421) | 2229421..2229762 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| N0470_RS10755 (2229897) | 2229897..2230223 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| N0470_RS10760 (2230429) | 2230429..2231643 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| N0470_RS10765 (2231655) | 2231655..2232674 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| N0470_RS10770 (2232862) | 2232862..2234019 | - | 1158 | Protein_2102 | Putative defective protein IntQ ; Integrase | Integrase |
| N0470_RS10775 (2234033) | 2234033..2234728 | - | 696 | Protein_2103 | IS3 family transposase IS2 | Transposase |
| N0470_RS10780 (2234725) | 2234725..2235492 | - | 768 | Protein_2104 | exonuclease | - |
| N0470_RS10785 (2235585) | 2235585..2235776 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| N0470_RS10790 (2235773) | 2235773..2235961 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| N0470_RS10795 (2236529) | 2236529..2236747 | - | 219 | WP_001171942.1 | protein YdfC | - |
| N0470_RS10800 (2236777) | 2236777..2236905 | - | 129 | WP_000344964.1 | protein YdfB | - |
| N0470_RS10805 (2236907) | 2236907..2237062 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| N0470_RS10810 (2237229) | 2237229..2237636 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| N0470_RS10815 (2237720) | 2237720..2237950 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| N0470_RS10820 (2237934) | 2237934..2238212 | + | 279 | Protein_2112 | hypothetical protein | - |
| N0470_RS10825 (2238247) | 2238247..2238396 | + | 150 | WP_011443592.1 | protein YdfW | - |
| N0470_RS10830 (2238833) | 2238833..2239165 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| N0470_RS10835 (2239368) | 2239368..2239673 | - | 306 | WP_001326990.1 | protein YdfV | - |
| N0470_RS10840 (2239698) | 2239698..2239937 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| N0470_RS10845 (2239937) | 2239937..2240224 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| N0470_RS10850 (2240296) | 2240296..2240451 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| N0470_RS10855 (2240668) | 2240668..2240919 | + | 252 | WP_000980994.1 | protein Rem | - |
| N0470_RS10860 (2240986) | 2240986..2241264 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| N0470_RS10865 (2241266) | 2241266..2242315 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| N0470_RS10870 (2242329) | 2242329..2243081 | + | 753 | WP_001047135.1 | antitermination protein | - |
| N0470_RS10875 (2243359) | 2243359..2243448 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| N0470_RS10880 (2243503) | 2243503..2243715 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| N0470_RS10885 (2244016) | 2244016..2244231 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| N0470_RS10890 (2244595) | 2244595..2244765 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| N0470_RS10895 (2244985) | 2244985..2245200 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| N0470_RS10900 (2245205) | 2245205..2245516 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| N0470_RS10905 (2245513) | 2245513..2246046 | + | 534 | WP_001092971.1 | lysozyme | - |
| N0470_RS10910 (2246043) | 2246043..2246540 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| N0470_RS10915 (2246903) | 2246903..2247115 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| N0470_RS10920 (2247126) | 2247126..2247314 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| N0470_RS10925 (2247317) | 2247317..2247382 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| N0470_RS10930 (2247461) | 2247461..2247616 | + | 156 | WP_001309517.1 | protein YnfN | - |
| N0470_RS10935 (2247788) | 2247788..2247961 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| N0470_RS10940 (2248113) | 2248113..2248523 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| N0470_RS10945 (2248581) | 2248581..2248814 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| N0470_RS10950 (2249203) | 2249203..2249772 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| N0470_RS10955 (2249723) | 2249723..2250685 | + | 963 | WP_001027733.1 | phage tail protein | - |
| N0470_RS10960 (2250685) | 2250685..2251260 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| N0470_RS10965 (2251358) | 2251358..2251948 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| N0470_RS10970 (2252265) | 2252265..2252498 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| N0470_RS10975 (2252567) | 2252567..2252680 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| N0470_RS10980 (2253201) | 2253201..2254568 | + | 1368 | Protein_2144 | MHS family MFS transporter | - |
| N0470_RS10985 (2254657) | 2254657..2256117 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| N0470_RS10990 (2256152) | 2256152..2256355 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| N0470_RS10995 (2256532) | 2256532..2257218 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| N0470_RS11000 (2257307) | 2257307..2258053 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0 |