MGE detailed information
MGE type: Prophage MGE length: 34728 bp
Accession: NZ_CP102380 Location: 1503513..1538240 Organism: Escherichia coli strain BM28 Replicon: chromosome
Accession: NZ_CP102380 Location: 1503513..1538240 Organism: Escherichia coli strain BM28 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NR349_RS07260 (1499957) | 1499957..1500703 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| NR349_RS07265 (1500792) | 1500792..1501478 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| NR349_RS07270 (1501655) | 1501655..1501858 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| NR349_RS07275 (1501893) | 1501893..1503353 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| NR349_RS07280 (1503513) | 1503513..1504721 | - | 1209 | WP_001339197.1 | IS4 family transposase IS10R | Transposase |
| NR349_RS07285 (1504825) | 1504825..1506063 | - | 1239 | Protein_1421 | MHS family MFS transporter YdfJ | - |
| NR349_RS07290 (1506667) | 1506667..1506780 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| NR349_RS07295 (1506849) | 1506849..1507082 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| NR349_RS07300 (1507399) | 1507399..1507989 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| NR349_RS07305 (1508087) | 1508087..1508662 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| NR349_RS07310 (1508662) | 1508662..1509624 | - | 963 | WP_001027733.1 | phage tail protein | - |
| NR349_RS07315 (1509575) | 1509575..1510144 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| NR349_RS07320 (1510533) | 1510533..1510766 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| NR349_RS07325 (1510824) | 1510824..1511234 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| NR349_RS07330 (1511386) | 1511386..1511559 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| NR349_RS07335 (1511731) | 1511731..1511886 | - | 156 | WP_001309517.1 | protein YnfN | - |
| NR349_RS07340 (1511965) | 1511965..1512030 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| NR349_RS07345 (1512033) | 1512033..1512221 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| NR349_RS07350 (1512232) | 1512232..1512444 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| NR349_RS07355 (1512807) | 1512807..1513304 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| NR349_RS07360 (1513301) | 1513301..1513834 | - | 534 | WP_001092971.1 | lysozyme | - |
| NR349_RS07365 (1513831) | 1513831..1514142 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| NR349_RS07370 (1514147) | 1514147..1514362 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| NR349_RS07375 (1514582) | 1514582..1514752 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| NR349_RS07380 (1515116) | 1515116..1515331 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| NR349_RS07385 (1515632) | 1515632..1515844 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| NR349_RS07390 (1515899) | 1515899..1515988 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| NR349_RS07395 (1516266) | 1516266..1517018 | - | 753 | WP_001047135.1 | antitermination protein | - |
| NR349_RS07400 (1517032) | 1517032..1518081 | - | 1050 | WP_001393597.1 | DUF968 domain-containing protein | - |
| NR349_RS07405 (1518083) | 1518083..1518361 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| NR349_RS07410 (1518428) | 1518428..1518679 | - | 252 | WP_000980994.1 | protein Rem | - |
| NR349_RS07415 (1518896) | 1518896..1519051 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| NR349_RS07420 (1519123) | 1519123..1519410 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| NR349_RS07425 (1519410) | 1519410..1519649 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| NR349_RS07430 (1519674) | 1519674..1519979 | + | 306 | WP_001326990.1 | protein YdfV | - |
| NR349_RS07435 (1520182) | 1520182..1520514 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| NR349_RS07440 (1520951) | 1520951..1521100 | - | 150 | WP_011443592.1 | protein YdfW | - |
| NR349_RS07445 (1521135) | 1521135..1521413 | - | 279 | Protein_1453 | hypothetical protein | - |
| NR349_RS07450 (1521397) | 1521397..1521627 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| NR349_RS07455 (1521711) | 1521711..1522118 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| NR349_RS07460 (1522285) | 1522285..1522440 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| NR349_RS07465 (1522442) | 1522442..1522570 | + | 129 | WP_000344964.1 | protein YdfB | - |
| NR349_RS07470 (1522600) | 1522600..1522818 | + | 219 | WP_001171942.1 | protein YdfC | - |
| NR349_RS07475 (1523386) | 1523386..1523574 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| NR349_RS07480 (1523571) | 1523571..1523762 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| NR349_RS07485 (1523855) | 1523855..1524622 | + | 768 | Protein_1461 | exonuclease | - |
| NR349_RS07490 (1524619) | 1524619..1525314 | + | 696 | Protein_1462 | IS3 family transposase IS2 | Transposase |
| NR349_RS07495 (1525328) | 1525328..1526485 | + | 1158 | Protein_1463 | Putative defective protein IntQ ; Integrase | Integrase |
| NR349_RS07500 (1526673) | 1526673..1527692 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| NR349_RS07505 (1527704) | 1527704..1528918 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| NR349_RS07510 (1529124) | 1529124..1529450 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| NR349_RS07515 (1529585) | 1529585..1529926 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| NR349_RS07520 (1529961) | 1529961..1530521 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| NR349_RS07525 (1530524) | 1530524..1531234 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| NR349_RS07530 (1531342) | 1531342..1531647 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| NR349_RS07535 (1531846) | 1531846..1534272 | + | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| NR349_RS07540 (1534333) | 1534333..1536756 | + | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| NR349_RS07545 (1536767) | 1536767..1537384 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| NR349_RS07550 (1537386) | 1537386..1538240 | + | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| NR349_RS07555 (1538283) | 1538283..1538897 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| NR349_RS07560 (1539056) | 1539056..1540348 | + | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| NR349_RS07565 (1540301) | 1540301..1540996 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| NR349_RS07570 (1541121) | 1541121..1542341 | - | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.001 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.001 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.001 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.001 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.001 |