MGE detailed information
MGE type: Conjugative plasmid MGE length: 110202 bp
Accession: NZ_CP100116 Location: 1..110202 Organism: Klebsiella pneumoniae strain HSKP1 Replicon: plasmid pHSKP1-2
Accession: NZ_CP100116 Location: 1..110202 Organism: Klebsiella pneumoniae strain HSKP1 Replicon: plasmid pHSKP1-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NIL09_RS26860 (1) | 1..978 | + | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| NIL09_RS26865 (1263) | 1263..2003 | - | 741 | WP_001066953.1 | tyrosine-type recombinase/integrase | - |
| NIL09_RS26870 (2124) | 2124..2306 | - | 183 | WP_042344623.1 | hypothetical protein | - |
| NIL09_RS26875 (2373) | 2373..2662 | - | 290 | Protein_3 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| NIL09_RS26880 (2649) | 2649..2917 | - | 269 | Protein_4 | type II toxin-antitoxin system ParD family antitoxin | - |
| NIL09_RS26885 (3078) | 3078..4306 | + | 1229 | WP_113708090.1 | IS3 family transposase IS2 | Transposase |
| NIL09_RS26890 (4785) | 4785..5699 | + | 915 | WP_223429136.1 | hypothetical protein | - |
| NIL09_RS26895 (5988) | 5988..6116 | + | 129 | Protein_7 | IS481 family transposase | - |
| NIL09_RS26900 (6151) | 6151..6444 | - | 294 | WP_001105060.1 | hypothetical protein | - |
| NIL09_RS26905 (6550) | 6550..6825 | - | 276 | WP_000421272.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| NIL09_RS26910 (6825) | 6825..7109 | - | 285 | WP_001387467.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| NIL09_RS26915 (7714) | 7714..8466 | + | 753 | WP_000562172.1 | IclR family transcriptional regulator | - |
| NIL09_RS26920 (8512) | 8512..8781 | - | 270 | Protein_12 | 2-keto-3-deoxygluconate permease | - |
| NIL09_RS26925 (8842) | 8842..9546 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| NIL09_RS26930 (9599) | 9599..9835 | - | 237 | Protein_14 | DUF3330 domain-containing protein | - |
| NIL09_RS26935 (10038) | 10038..11051 | - | 1014 | WP_000845048.1 | class 1 integron integrase IntI1 | - |
| NIL09_RS26940 (11200) | 11200..12038 | + | 839 | Protein_16 | hypothetical protein | ARG |
| NIL09_RS26950 (13113) | 13113..13385 | - | 273 | Protein_18 | IS1 family transposase | - |
| NIL09_RS26955 (13479) | 13479..14912 | + | 1434 | WP_001288435.1 | DNA cytosine methyltransferase | - |
| NIL09_RS26960 (14946) | 14946..16160 | - | 1215 | WP_001532073.1 | type II site-specific deoxyribonuclease | - |
| NIL09_RS26965 (16516) | 16516..16620 | - | 105 | Protein_21 | IS6 family transposase | - |
| NIL09_RS26970 (16677) | 16677..17645 | - | 969 | WP_013362812.1 | IS5 family transposase IS903B | Transposase |
| NIL09_RS26975 (17976) | 17976..18185 | - | 210 | Protein_23 | dihydropteroate synthase | - |
| NIL09_RS26980 (18179) | 18179..18526 | - | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| NIL09_RS26985 (18718) | 18718..19977 | - | 1260 | Protein_25 | Multidrug resistance protein MdtL | ARG |
| NIL09_RS26990 (20244) | 20244..20798 | - | 555 | WP_032488579.1 | aminoglycoside N-acetyltransferase AAC(6')-Ib3 | - |
| NIL09_RS26995 (20978) | 20978..21658 | + | 681 | Protein_27 | IS91 family transposase ISAzo26 | Transposase |
| NIL09_RS27000 (21723) | 21723..22427 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| NIL09_RS27005 (22493) | 22493..23038 | + | 546 | Protein_29 | Tn3 family transposase TnpA_Tn3 | Transposase |
| NIL09_RS27010 (23074) | 23074..23489 | - | 416 | Protein_30 | IS1-like element IS1B family transposase | - |
| NIL09_RS27015 (23738) | 23738..24139 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| NIL09_RS27020 (24072) | 24072..24329 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| NIL09_RS27025 (24422) | 24422..25075 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| NIL09_RS27030 (25889) | 25889..27460 | - | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| NIL09_RS27035 (27480) | 27480..27827 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| NIL09_RS27040 (27827) | 27827..28504 | - | 678 | WP_001682408.1 | IS66 family transposase ISCro1 | Transposase |
| NIL09_RS27045 (28721) | 28721..29578 | - | 858 | WP_000130646.1 | incFII family plasmid replication initiator RepA | - |
| NIL09_RS27050 (29571) | 29571..29645 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| NIL09_RS27055 (29883) | 29883..30137 | - | 255 | WP_000083830.1 | replication regulatory protein RepA | - |
| NIL09_RS27060 (30377) | 30377..30967 | - | 591 | WP_000766807.1 | DUF2726 domain-containing protein | - |
| NIL09_RS27065 (31005) | 31005..31214 | - | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| NIL09_RS27070 (31260) | 31260..31721 | - | 462 | WP_001233838.1 | thermonuclease family protein | - |
| NIL09_RS27075 (31966) | 31966..32178 | - | 213 | WP_001309245.1 | ANR family transcriptional regulator | - |
| NIL09_RS27080 (32307) | 32307..32867 | - | 561 | WP_000139323.1 | fertility inhibition protein FinO | - |
| NIL09_RS27085 (32970) | 32970..33830 | - | 861 | WP_000704523.1 | Quorum-quenching protein AidA | VF |
| NIL09_RS27090 (33889) | 33889..34635 | - | 747 | WP_000205725.1 | conjugal transfer pilus acetylase TraX | - |
| NIL09_RS27095 (34655) | 34655..39925 | - | 5271 | WP_000948354.1 | Multifunctional conjugation protein TraI | Relaxase |
| NIL09_RS27100 (39925) | 39925..42105 | - | 2181 | WP_000009333.1 | type IV conjugative transfer system coupling protein TraD | - |
| NIL09_RS27105 (42156) | 42156..42893 | - | 738 | WP_000199905.1 | hypothetical protein | - |
| NIL09_RS27110 (43096) | 43096..43827 | - | 732 | WP_000782451.1 | conjugal transfer complement resistance protein TraT | - |
| NIL09_RS27115 (43925) | 43925..44893 | + | 969 | WP_013362812.1 | IS5 family transposase IS903B | Transposase |
| NIL09_RS27120 (44945) | 44945..45214 | - | 270 | Protein_52 | hypothetical protein | - |
| NIL09_RS27125 (45242) | 45242..45460 | - | 219 | WP_000556745.1 | hypothetical protein | - |
| NIL09_RS27130 (45540) | 45540..46013 | - | 474 | WP_000549568.1 | hypothetical protein | - |
| NIL09_RS27135 (46006) | 46006..46419 | - | 414 | WP_000549589.1 | hypothetical protein | - |
| NIL09_RS27140 (46412) | 46412..46633 | - | 222 | WP_001278683.1 | conjugal transfer protein TraR | - |
| NIL09_RS27145 (46768) | 46768..47283 | - | 516 | WP_000809881.1 | type IV conjugative transfer system lipoprotein TraV | - |
| NIL09_RS27150 (47280) | 47280..47600 | - | 321 | WP_001057307.1 | conjugal transfer protein TrbD | - |
| NIL09_RS27155 (47587) | 47587..48153 | - | 567 | WP_000896599.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| NIL09_RS27160 (48143) | 48143..49594 | - | 1452 | WP_000146675.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| NIL09_RS27165 (49594) | 49594..50322 | - | 729 | WP_001230772.1 | type-F conjugative transfer system secretin TraK | - |
| NIL09_RS27170 (50309) | 50309..50875 | - | 567 | WP_000399780.1 | type IV conjugative transfer system protein TraE | - |
| NIL09_RS27175 (50897) | 50897..51208 | - | 312 | WP_000012113.1 | type IV conjugative transfer system protein TraL | - |
| NIL09_RS27180 (51223) | 51223..51582 | - | 360 | WP_001098992.1 | type IV conjugative transfer system pilin TraA | - |
| NIL09_RS27185 (51615) | 51615..51842 | - | 228 | WP_000089263.1 | conjugal transfer relaxosome protein TraY | - |
| NIL09_RS27190 (51979) | 51979..52650 | - | 672 | WP_000283561.1 | conjugal transfer transcriptional regulator TraJ | - |
| NIL09_RS27195 (52844) | 52844..53227 | - | 384 | WP_001354030.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| NIL09_RS27200 (53562) | 53562..54152 | + | 591 | WP_000252683.1 | hypothetical protein | VF |
| NIL09_RS27205 (54449) | 54449..55270 | - | 822 | WP_001234445.1 | DUF932 domain-containing protein | - |
| NIL09_RS27210 (55381) | 55381..55677 | - | 297 | WP_001272251.1 | hypothetical protein | - |
| NIL09_RS27215 (55977) | 55977..56273 | + | 297 | Protein_71 | hypothetical protein | - |
| NIL09_RS27220 (56592) | 56592..56717 | - | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| NIL09_RS27225 (56659) | 56659..56808 | - | 150 | Protein_73 | plasmid maintenance protein Mok | - |
| - (56794) | 56794..57018 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (56794) | 56794..57018 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (56794) | 56794..57018 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (56794) | 56794..57018 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| NIL09_RS27230 (57030) | 57030..57749 | - | 720 | WP_001276217.1 | plasmid SOS inhibition protein A | - |
| NIL09_RS27235 (57746) | 57746..58180 | - | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| NIL09_RS27240 (58249) | 58249..60272 | - | 2024 | Protein_76 | ParB/RepB/Spo0J family partition protein | - |
| NIL09_RS27245 (60333) | 60333..60566 | - | 234 | WP_000006003.1 | DUF905 family protein | - |
| NIL09_RS27250 (60624) | 60624..61151 | - | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| NIL09_RS27255 (61453) | 61453..61914 | + | 462 | Protein_79 | hypothetical protein | - |
| NIL09_RS27260 (62000) | 62000..62563 | - | 564 | WP_001298559.1 | class I SAM-dependent methyltransferase | - |
| NIL09_RS27265 (62610) | 62610..63971 | - | 1362 | WP_000170695.1 | DUF3560 domain-containing protein | - |
| NIL09_RS27270 (64023) | 64023..64253 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| NIL09_RS27275 (64770) | 64770..64924 | + | 155 | Protein_83 | hypothetical protein | - |
| NIL09_RS27280 (65653) | 65653..67320 | + | 1668 | WP_012372796.1 | group II intron reverse transcriptase/maturase | - |
| NIL09_RS27285 (67634) | 67634..67825 | - | 192 | WP_001027493.1 | hypothetical protein | - |
| NIL09_RS27290 (67822) | 67822..68244 | - | 423 | WP_000271762.1 | DUF1380 family protein | - |
| NIL09_RS27295 (68291) | 68291..68716 | - | 426 | WP_001198928.1 | antirestriction protein | - |
| NIL09_RS27300 (69134) | 69134..69910 | - | 777 | WP_001383963.1 | hypothetical protein | - |
| NIL09_RS27305 (69961) | 69961..70395 | - | 435 | WP_000274503.1 | DUF1380 family protein | - |
| NIL09_RS27310 (70409) | 70409..70630 | - | 222 | WP_001104881.1 | hypothetical protein | - |
| NIL09_RS27315 (70631) | 70631..71314 | - | 684 | WP_000086185.1 | DNA methylase | - |
| NIL09_RS27320 (71391) | 71391..71702 | - | 312 | WP_011254640.1 | hypothetical protein | - |
| NIL09_RS27325 (71699) | 71699..72601 | - | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| NIL09_RS27330 (73468) | 73468..74439 | - | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| NIL09_RS27335 (74439) | 74439..75605 | - | 1167 | WP_000772446.1 | hypothetical protein | VF |
| NIL09_RS27340 (76193) | 76193..76948 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| NIL09_RS27345 (77722) | 77722..78528 | - | 807 | WP_000016982.1 | site-specific integrase | - |
| NIL09_RS27350 (78529) | 78529..78834 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| NIL09_RS27355 (78836) | 78836..79054 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| NIL09_RS27360 (79646) | 79646..80134 | + | 489 | WP_011254646.1 | hypothetical protein | - |
| NIL09_RS27365 (80168) | 80168..81301 | - | 1134 | WP_001542067.1 | DUF3800 domain-containing protein | - |
| NIL09_RS27370 (81468) | 81468..82241 | - | 774 | WP_000905949.1 | hypothetical protein | - |
| NIL09_RS27375 (82254) | 82254..82754 | - | 501 | WP_000528931.1 | HEPN family nuclease | - |
| NIL09_RS27380 (83019) | 83019..83249 | + | 231 | WP_001261278.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| NIL09_RS27385 (83246) | 83246..83662 | + | 417 | WP_001034046.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| NIL09_RS27390 (83707) | 83707..87501 | - | 3795 | WP_001144732.1 | hypothetical protein | - |
| NIL09_RS27395 (87848) | 87848..88078 | + | 231 | WP_001261286.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| NIL09_RS27400 (88075) | 88075..88491 | + | 417 | WP_001034044.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| NIL09_RS27405 (88566) | 88566..90131 | + | 1566 | WP_001128474.1 | AAA family ATPase | - |
| NIL09_RS27410 (90116) | 90116..91138 | + | 1023 | WP_000361402.1 | helicase UvrD | - |
| NIL09_RS27420 (92469) | 92469..94670 | - | 2202 | WP_000973519.1 | Ferric aerobactin receptor | VF |
| NIL09_RS27425 (94696) | 94696..96029 | - | 1334 | Protein_113 | L-lysine N6-monooxygenase | VF |
| NIL09_RS27430 (96026) | 96026..97768 | - | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| NIL09_RS27435 (97768) | 97768..98715 | - | 948 | WP_000011908.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| NIL09_RS27440 (98716) | 98716..100440 | - | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| NIL09_RS27445 (100576) | 100576..101769 | + | 1194 | WP_000095526.1 | MFS transporter | - |
| NIL09_RS27450 (102149) | 102149..102529 | - | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| NIL09_RS27455 (102870) | 102870..103283 | - | 414 | Protein_119 | phosphopyruvate hydratase | - |
| NIL09_RS27460 (103281) | 103281..103538 | + | 258 | Protein_120 | transposase | - |
| NIL09_RS27465 (103772) | 103772..104629 | - | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| NIL09_RS27470 (104626) | 104626..105483 | - | 858 | WP_001101723.1 | Manganese transport system membrane protein MntB | ARG |
| NIL09_RS27475 (105480) | 105480..106307 | - | 828 | WP_000983710.1 | Manganese transport system ATP-binding protein MntB | VF |
| NIL09_RS27480 (106307) | 106307..107221 | - | 915 | WP_072644633.1 | putative periplasmic iron-binding protein | VF |
| NIL09_RS27485 (107577) | 107577..108274 | + | 698 | WP_223155668.1 | IS1-like element IS1A family transposase | - |
| NIL09_RS27490 (108454) | 108454..108967 | - | 514 | Protein_126 | DUF4113 domain-containing protein | - |
| NIL09_RS27495 (109028) | 109028..109132 | - | 105 | Protein_127 | AAA family ATPase | - |
| NIL09_RS27500 (109134) | 109134..109457 | - | 324 | Protein_128 | IS21 family transposase IS21 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|