MGE detailed information
MGE type: Prophage MGE length: 30855 bp
Accession: NZ_CP099590 Location: 2219597..2250451 Organism: Escherichia coli strain WG1 Replicon: chromosome
Accession: NZ_CP099590 Location: 2219597..2250451 Organism: Escherichia coli strain WG1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NHF37_RS10670 (2216972) | 2216972..2219398 | - | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| NHF37_RS10675 (2219597) | 2219597..2219902 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| NHF37_RS10680 (2220010) | 2220010..2220720 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| NHF37_RS10685 (2220723) | 2220723..2221283 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| NHF37_RS10690 (2221318) | 2221318..2221659 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| NHF37_RS10695 (2221794) | 2221794..2222120 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| NHF37_RS10700 (2222326) | 2222326..2223540 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| NHF37_RS10705 (2223552) | 2223552..2224571 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| NHF37_RS10710 (2224759) | 2224759..2225916 | - | 1158 | Protein_2104 | Tyrosine recombinase XerD ; Integrase | Integrase |
| NHF37_RS10715 (2225930) | 2225930..2226127 | - | 198 | Protein_2105 | IS3 family transposase IS2 | Transposase |
| NHF37_RS10720 (2226216) | 2226216..2227444 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| NHF37_RS10725 (2227455) | 2227455..2227961 | - | 507 | Protein_2107 | IS3 family transposase IS2 | Transposase |
| NHF37_RS10730 (2227958) | 2227958..2228725 | - | 768 | Protein_2108 | exonuclease | - |
| NHF37_RS10735 (2228818) | 2228818..2229009 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| NHF37_RS10740 (2229006) | 2229006..2229194 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| NHF37_RS10745 (2229762) | 2229762..2229980 | - | 219 | WP_001171942.1 | protein YdfC | - |
| NHF37_RS23190 (2230010) | 2230010..2230138 | - | 129 | WP_000344964.1 | protein YdfB | - |
| NHF37_RS10750 (2230140) | 2230140..2230295 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| NHF37_RS10755 (2230462) | 2230462..2230869 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| NHF37_RS10760 (2230953) | 2230953..2231183 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| NHF37_RS10765 (2231167) | 2231167..2231445 | + | 279 | Protein_2116 | protein YdfX | - |
| NHF37_RS10770 (2231480) | 2231480..2231629 | + | 150 | WP_011443592.1 | protein YdfW | - |
| NHF37_RS10775 (2232066) | 2232066..2232398 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| NHF37_RS10780 (2232601) | 2232601..2232906 | - | 306 | WP_001326990.1 | protein YdfV | - |
| NHF37_RS10785 (2232931) | 2232931..2233170 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| NHF37_RS10790 (2233170) | 2233170..2233457 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| NHF37_RS10795 (2233529) | 2233529..2233684 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| NHF37_RS10800 (2233901) | 2233901..2234152 | + | 252 | WP_000980994.1 | protein Rem | - |
| NHF37_RS10805 (2234219) | 2234219..2234497 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| NHF37_RS10810 (2234499) | 2234499..2235548 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| NHF37_RS10815 (2235562) | 2235562..2236314 | + | 753 | WP_001047135.1 | antitermination protein | - |
| NHF37_RS10820 (2236592) | 2236592..2236681 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| NHF37_RS10825 (2236736) | 2236736..2236948 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| NHF37_RS10830 (2237249) | 2237249..2237464 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| NHF37_RS10835 (2237828) | 2237828..2237998 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| NHF37_RS10840 (2238218) | 2238218..2238433 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| NHF37_RS10845 (2238438) | 2238438..2238749 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| NHF37_RS10850 (2238746) | 2238746..2239279 | + | 534 | WP_001092971.1 | lysozyme | - |
| NHF37_RS10855 (2239276) | 2239276..2239773 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| NHF37_RS10860 (2240136) | 2240136..2240348 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| NHF37_RS10865 (2240359) | 2240359..2240547 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| NHF37_RS10870 (2240550) | 2240550..2240615 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| NHF37_RS10875 (2240694) | 2240694..2240849 | + | 156 | WP_001309517.1 | protein YnfN | - |
| NHF37_RS10880 (2241021) | 2241021..2241194 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| NHF37_RS10885 (2241346) | 2241346..2241756 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| NHF37_RS10890 (2241814) | 2241814..2242047 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| NHF37_RS10895 (2242436) | 2242436..2243005 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| NHF37_RS10900 (2242956) | 2242956..2243918 | + | 963 | WP_001027733.1 | phage tail protein | - |
| NHF37_RS10905 (2243918) | 2243918..2244493 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| NHF37_RS10910 (2244591) | 2244591..2245181 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| NHF37_RS10915 (2245498) | 2245498..2245731 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| NHF37_RS10920 (2245800) | 2245800..2245913 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| NHF37_RS10925 (2246434) | 2246434..2247801 | + | 1368 | Protein_2148 | MHS family MFS transporter | - |
| NHF37_RS10930 (2247890) | 2247890..2249350 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| NHF37_RS10935 (2249385) | 2249385..2249588 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| NHF37_RS10940 (2249765) | 2249765..2250451 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| NHF37_RS10945 (2250540) | 2250540..2251286 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| NHF37_RS10950 (2251423) | 2251423..2253468 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| NHF37_RS10955 (2253512) | 2253512..2254030 | - | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| NHF37_RS10960 (2254306) | 2254306..2254698 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.01 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.009 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.009 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.008 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.008 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.009 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.009 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.006 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.009 |