MGE detailed information
MGE type: Integron MGE length: 41440 bp
Accession: NZ_CP090386 Location: 940330..981769 Organism: Vibrio cholerae strain GXFL1-4 Replicon: chromosome
Accession: NZ_CP090386 Location: 940330..981769 Organism: Vibrio cholerae strain GXFL1-4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LY388_RS04020 (LY388_04020) | 936627..939413 | - | 2787 | WP_199358629.1 | alkaline phosphatase family protein | - |
| LY388_RS04025 (LY388_04025) | 939930..940330 | - | 401 | Protein_801 | type II toxin-antitoxin system death-on-curing family toxin | - |
| LY388_RS04030 (LY388_04030) | 940330..940500 | - | 171 | WP_057569703.1 | hypothetical protein | - |
| LY388_RS04035 (LY388_04035) | 941218..942176 | + | 959 | Protein_803 | IS30 family transposase | - |
| LY388_RS04040 (LY388_04040) | 942294..942566 | + | 273 | WP_000246255.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| LY388_RS04045 (LY388_04045) | 942563..943060 | + | 498 | WP_057563831.1 | GNAT family N-acetyltransferase | Toxin Detail |
| LY388_RS04050 (LY388_04050) | 943217..943651 | - | 435 | WP_057569701.1 | GNAT family N-acetyltransferase | - |
| LY388_RS04055 (LY388_04055) | 943848..944132 | + | 285 | WP_000381183.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| LY388_RS04060 (LY388_04060) | 944129..944407 | + | 279 | WP_000578471.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| LY388_RS04065 (LY388_04065) | 944546..945184 | - | 639 | WP_057563214.1 | HD domain-containing protein | - |
| LY388_RS04070 (LY388_04070) | 945348..945971 | - | 624 | WP_199358687.1 | DUF1349 domain-containing protein | - |
| LY388_RS04075 (LY388_04075) | 946181..946363 | - | 183 | WP_060780652.1 | DUF645 family protein | - |
| LY388_RS04080 (LY388_04080) | 946658..947044 | - | 387 | WP_001015867.1 | NUDIX hydrolase | - |
| LY388_RS04085 (LY388_04085) | 947277..947729 | + | 453 | WP_000024294.1 | DUF2384 domain-containing protein | - |
| LY388_RS04090 (LY388_04090) | 947729..948199 | + | 471 | WP_057563215.1 | RES family NAD+ phosphorylase | - |
| LY388_RS04095 (LY388_04095) | 948340..948792 | - | 453 | WP_053034773.1 | HPP family protein | - |
| LY388_RS04100 (LY388_04100) | 948887..949438 | + | 552 | WP_057563216.1 | TetR/AcrR family transcriptional regulator | - |
| LY388_RS04105 (LY388_04105) | 949556..950029 | - | 474 | WP_057563217.1 | GrpB family protein | - |
| LY388_RS04110 (LY388_04110) | 950116..950619 | - | 504 | WP_148505025.1 | hypothetical protein | - |
| LY388_RS04115 (LY388_04115) | 950782..951204 | - | 423 | WP_000734968.1 | hypothetical protein | - |
| LY388_RS04120 (LY388_04120) | 951798..952334 | - | 537 | WP_057563741.1 | nucleotidyltransferase family protein | - |
| LY388_RS04125 (LY388_04125) | 952530..952635 | - | 106 | Protein_821 | DUF645 family protein | - |
| LY388_RS04130 (LY388_04130) | 952744..952902 | - | 159 | WP_080391612.1 | acetyltransferase | - |
| LY388_RS04135 (LY388_04135) | 953177..953641 | + | 465 | WP_057563740.1 | hypothetical protein | - |
| LY388_RS04140 (LY388_04140) | 953719..954018 | - | 300 | WP_057563739.1 | hypothetical protein | - |
| LY388_RS04145 (LY388_04145) | 954162..954650 | - | 489 | WP_234115897.1 | hypothetical protein | - |
| LY388_RS04150 (LY388_04150) | 954803..956110 | - | 1308 | WP_057563836.1 | DUF4325 domain-containing protein | - |
| LY388_RS04155 (LY388_04155) | 956248..957174 | - | 927 | WP_057563834.1 | PD-(D/E)XK nuclease superfamily protein | - |
| LY388_RS04160 (LY388_04160) | 957443..957739 | - | 297 | Protein_828 | DUF3709 domain-containing protein | - |
| LY388_RS04165 (LY388_04165) | 957962..958249 | - | 288 | WP_000869987.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LY388_RS04170 (LY388_04170) | 958246..958527 | - | 282 | WP_000086649.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| LY388_RS04175 (LY388_04175) | 958735..959199 | - | 465 | WP_057563827.1 | ASCH domain-containing protein | - |
| LY388_RS04180 (LY388_04180) | 959350..960102 | - | 753 | WP_001035644.1 | hypothetical protein | - |
| LY388_RS04185 (LY388_04185) | 960257..960544 | - | 288 | WP_000221354.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LY388_RS04190 (LY388_04190) | 960534..960785 | - | 252 | WP_001250177.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| LY388_RS04195 (LY388_04195) | 961092..961469 | + | 378 | WP_000734783.1 | PEGA domain-containing protein | - |
| LY388_RS04200 (LY388_04200) | 961650..961757 | - | 108 | WP_080391616.1 | Tfp pilus assembly protein | - |
| LY388_RS04205 (LY388_04205) | 961741..961863 | - | 123 | WP_057569709.1 | DUF645 family protein | - |
| LY388_RS04210 (LY388_04210) | 962218..962397 | - | 180 | WP_199358724.1 | DUF645 family protein | - |
| LY388_RS04215 (LY388_04215) | 962697..963233 | - | 537 | WP_033931679.1 | GNAT family protein | - |
| LY388_RS04220 (LY388_04220) | 963383..963919 | - | 537 | WP_000644495.1 | nucleotidyltransferase family protein | - |
| LY388_RS04225 (LY388_04225) | 964171..964407 | + | 237 | WP_000772130.1 | RNA-binding protein | - |
| LY388_RS04230 (LY388_04230) | 964582..964941 | - | 360 | WP_001071521.1 | VOC family protein | - |
| LY388_RS04235 (LY388_04235) | 965117..965716 | - | 600 | WP_057563813.1 | outer membrane beta-barrel protein | - |
| LY388_RS04240 (LY388_04240) | 965884..966021 | - | 138 | Protein_844 | cell shape-determining protein MreC | - |
| LY388_RS04245 (LY388_04245) | 965996..966049 | - | 54 | Protein_845 | DUF645 family protein | - |
| LY388_RS04250 (LY388_04250) | 966172..966315 | - | 144 | Protein_846 | acetyltransferase | - |
| LY388_RS19775 | 966465..966617 | - | 153 | WP_262364168.1 | DUF645 family protein | - |
| LY388_RS04260 (LY388_04260) | 966959..967222 | - | 264 | WP_199358682.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| LY388_RS04265 (LY388_04265) | 967215..967469 | - | 255 | WP_001223794.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin Detail |
| LY388_RS04270 (LY388_04270) | 967679..968104 | - | 426 | WP_000403003.1 | GNAT family N-acetyltransferase | - |
| LY388_RS04275 (LY388_04275) | 968199..968603 | - | 405 | WP_234115989.1 | hypothetical protein | - |
| LY388_RS04280 (LY388_04280) | 968677..968772 | - | 96 | WP_095472975.1 | DUF3265 domain-containing protein | - |
| LY388_RS04285 (LY388_04285) | 968911..969750 | - | 840 | WP_057563442.1 | HNH endonuclease | - |
| LY388_RS04290 (LY388_04290) | 969763..971259 | - | 1497 | WP_057563443.1 | AAA family ATPase | - |
| LY388_RS04295 (LY388_04295) | 971682..971789 | - | 108 | Protein_855 | acetyltransferase | - |
| LY388_RS04300 (LY388_04300) | 971794..971916 | - | 123 | WP_234115990.1 | DUF3265 domain-containing protein | - |
| LY388_RS04305 (LY388_04305) | 971921..972277 | - | 357 | WP_033838071.1 | DUF6404 family protein | - |
| LY388_RS04310 (LY388_04310) | 972436..972933 | - | 498 | WP_000259916.1 | GNAT family N-acetyltransferase | - |
| LY388_RS04315 (LY388_04315) | 974285..974518 | - | 234 | WP_032478962.1 | DUF3709 domain-containing protein | - |
| LY388_RS04320 (LY388_04320) | 974546..974671 | - | 126 | WP_001915064.1 | hypothetical protein | - |
| LY388_RS04325 (LY388_04325) | 974923..975183 | - | 261 | WP_234115991.1 | DUF3709 domain-containing protein | - |
| LY388_RS04330 (LY388_04330) | 975177..975362 | - | 186 | WP_080281214.1 | disulfide bond formation protein DsbD | - |
| LY388_RS04335 (LY388_04335) | 975958..976383 | - | 426 | WP_234115898.1 | hypothetical protein | - |
| LY388_RS04340 (LY388_04340) | 976534..977382 | - | 849 | WP_057563812.1 | hypothetical protein | - |
| LY388_RS04345 (LY388_04345) | 977542..977937 | - | 396 | WP_000870868.1 | DUF3465 domain-containing protein | - |
| LY388_RS04350 (LY388_04350) | 978108..978422 | - | 315 | WP_000248689.1 | DUF4144 domain-containing protein | - |
| LY388_RS04355 (LY388_04355) | 978570..979373 | - | 804 | WP_187387433.1 | class I SAM-dependent methyltransferase | - |
| LY388_RS04360 (LY388_04360) | 979523..980311 | - | 789 | WP_114736530.1 | DUF2971 domain-containing protein | - |
| LY388_RS04365 (LY388_04365) | 980452..980988 | - | 537 | WP_234115899.1 | nucleotidyltransferase family protein | - |
| LY388_RS04370 (LY388_04370) | 981123..981620 | - | 498 | WP_033933253.1 | GNAT family N-acetyltransferase | - |
| LY388_RS04375 (LY388_04375) | 981764..981955 | - | 192 | Protein_871 | hypothetical protein | - |
| LY388_RS04380 (LY388_04380) | 982167..982838 | - | 672 | WP_113599381.1 | helix-turn-helix transcriptional regulator | - |
| LY388_RS04385 (LY388_04385) | 982910..983128 | + | 219 | WP_000758146.1 | hypothetical protein | - |
| LY388_RS04390 (LY388_04390) | 983145..983480 | + | 336 | WP_148525332.1 | primosomal protein | - |
| LY388_RS04395 (LY388_04395) | 983477..983611 | + | 135 | Protein_875 | IclR family transcriptional regulator | - |
| LY388_RS04400 (LY388_04400) | 983811..984782 | + | 972 | WP_148525335.1 | MarR family transcriptional regulator | - |
| LY388_RS04405 (LY388_04405) | 984789..986546 | + | 1758 | WP_000992438.1 | DDE-type integrase/transposase/recombinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|