MGE detailed information

MGE type: Prophage        MGE length: 115024 bp
Accession: NZ_CP090316        Location: 422869..537892         Organism: Xylella fastidiosa subsp. morus strain Riv16       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IUD23_RS01715 (IUD23_01715) 418758..419540 + 783 WP_027700510.1 peptidoglycan editing factor PgeF -
IUD23_RS01720 (IUD23_01720) 419537..419770 - 234 WP_152534383.1 hypothetical protein -
IUD23_RS01725 (IUD23_01725) 420015..420461 + 447 WP_038229929.1 thiol-disulfide oxidoreductase DCC family protein -
IUD23_RS01730 (IUD23_01730) 420626..422314 - 1689 WP_004086424.1 malate dehydrogenase (quinone) -
IUD23_RS01735 (IUD23_01735) 422869..424533 - 1665 WP_011098235.1 energy-dependent translational throttle protein EttA -
IUD23_RS01740 (IUD23_01740) 425215..426468 + 1254 WP_038229958.1 serine hydroxymethyltransferase -
IUD23_RS01745 (IUD23_01745) 426587..427042 + 456 WP_004086496.1 hypothetical protein -
IUD23_RS01750 (IUD23_01750) 427112..427645 + 534 WP_154415238.1 transcriptional regulator NrdR -
IUD23_RS01755 (IUD23_01755) 428078..429172 + 1095 WP_004086417.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
IUD23_RS01760 (IUD23_01760) 429760..430362 + 603 WP_004086415.1 riboflavin synthase -
IUD23_RS01765 (IUD23_01765) 430359..431492 + 1134 WP_038229930.1 3,4-dihydroxy-2-butanone-4-phosphate synthase -
IUD23_RS01770 (IUD23_01770) 431523..431987 + 465 WP_004086411.1 6,7-dimethyl-8-ribityllumazine synthase -
IUD23_RS01775 (IUD23_01775) 431984..432457 + 474 WP_004086409.1 transcription antitermination factor NusB -
IUD23_RS01780 (IUD23_01780) 432548..433522 + 975 WP_012338057.1 thiamine-phosphate kinase -
IUD23_RS01785 (IUD23_01785) 433906..434235 + 330 WP_230577624.1 hypothetical protein -
IUD23_RS01790 (IUD23_01790) 434232..434456 + 225 WP_004086512.1 hypothetical protein -
IUD23_RS01795 (IUD23_01795) 434842..436225 - 1384 Protein_337 PhoH family protein -
IUD23_RS01800 (IUD23_01800) 436290..436769 - 480 WP_004089690.1 peroxiredoxin -
IUD23_RS01805 (IUD23_01805) 436816..437391 - 576 WP_011098233.1 glycine cleavage system protein R -
IUD23_RS01810 (IUD23_01810) 437544..438452 + 909 WP_004089694.1 4-hydroxy-tetrahydrodipicolinate synthase -
IUD23_RS01815 (IUD23_01815) 438472..438978 + 507 WP_004089696.1 hypothetical protein -
IUD23_RS01820 (IUD23_01820) 439436..440023 - 588 WP_011098232.1 Tfp pilus assembly protein FimT/FimU -
IUD23_RS01825 (IUD23_01825) 440178..442187 + 2010 WP_038229932.1 excinuclease ABC subunit UvrB -
IUD23_RS01835 (IUD23_01835) 442317..442961 - 645 WP_230577731.1 tyrosine-type recombinase/integrase -
IUD23_RS01840 (IUD23_01840) 443369..443689 - 321 WP_038229933.1 helix-turn-helix domain-containing protein -
IUD23_RS01845 (IUD23_01845) 443748..444194 - 447 WP_038229935.1 single-stranded DNA-binding protein -
IUD23_RS01850 (IUD23_01850) 444261..444851 - 591 WP_038229937.1 Bro-N domain-containing protein -
IUD23_RS01855 (IUD23_01855) 445205..446848 - 1644 WP_038229938.1 YqaJ viral recombinase family protein -
IUD23_RS01860 (IUD23_01860) 446845..447780 - 936 WP_038229940.1 phage recombination protein Bet -
IUD23_RS01865 (IUD23_01865) 447796..448617 - 822 WP_027700618.1 DUF2303 family protein -
IUD23_RS01870 (IUD23_01870) 448657..449001 - 345 WP_038229942.1 hypothetical protein -
IUD23_RS01875 (IUD23_01875) 449022..449213 - 192 WP_038229961.1 hypothetical protein -
IUD23_RS01880 (IUD23_01880) 449332..449727 - 396 WP_230577623.1 hypothetical protein -
IUD23_RS01885 (IUD23_01885) 449900..450091 - 192 WP_004086365.1 hypothetical protein -
IUD23_RS01890 (IUD23_01890) 450088..450528 - 441 WP_230577622.1 hypothetical protein -
IUD23_RS01895 (IUD23_01895) 450789..451190 - 402 WP_230577621.1 hypothetical protein -
IUD23_RS01900 (IUD23_01900) 451379..451747 - 369 WP_020852210.1 DUF86 domain-containing protein -
IUD23_RS01905 (IUD23_01905) 451744..452034 - 291 WP_004086345.1 nucleotidyltransferase -
IUD23_RS01910 (IUD23_01910) 452057..452473 - 417 WP_234056372.1 hypothetical protein -
IUD23_RS01915 (IUD23_01915) 452633..453397 - 765 WP_051248012.1 XRE family transcriptional regulator -
IUD23_RS01920 (IUD23_01920) 453502..454017 - 516 WP_234056373.1 hypothetical protein -
IUD23_RS01925 (IUD23_01925) 454040..454186 + 147 WP_155238084.1 hypothetical protein -
IUD23_RS01930 (IUD23_01930) 454247..454435 + 189 WP_020851634.1 hypothetical protein -
IUD23_RS01935 (IUD23_01935) 454465..454680 + 216 WP_230577619.1 hypothetical protein -
IUD23_RS01940 (IUD23_01940) 454677..455042 + 366 WP_038229950.1 hypothetical protein -
IUD23_RS01945 (IUD23_01945) 455300..455902 + 603 WP_080703220.1 Bro-N domain-containing protein -
IUD23_RS01950 (IUD23_01950) 455899..456687 + 789 WP_040123280.1 Bro-N domain-containing protein -
IUD23_RS01955 (IUD23_01955) 456717..457826 + 1110 WP_040123381.1 Bro-N domain-containing protein -
IUD23_RS01960 (IUD23_01960) 457823..458710 + 888 WP_038229974.1 YdaU family protein -
IUD23_RS01965 (IUD23_01965) 458691..459380 + 690 WP_038229976.1 hypothetical protein -
IUD23_RS01970 (IUD23_01970) 459377..459838 + 462 WP_234056374.1 hypothetical protein -
IUD23_RS01975 (IUD23_01975) 459967..460665 + 699 WP_234056375.1 hypothetical protein -
IUD23_RS01980 (IUD23_01980) 460694..461095 - 402 WP_051606226.1 Arc family DNA-binding protein -
IUD23_RS01985 (IUD23_01985) 461197..461361 + 165 WP_080703205.1 Arc family DNA-binding protein -
IUD23_RS01990 (IUD23_01990) 461441..462277 + 837 WP_201800394.1 phage antirepressor N-terminal domain-containing protein -
IUD23_RS01995 (IUD23_01995) 462456..462956 + 501 WP_038230262.1 lysozyme -
IUD23_RS02000 (IUD23_02000) 462949..463278 + 330 WP_173391721.1 phage holin family protein -
IUD23_RS02005 (IUD23_02005) 463268..463729 + 462 WP_040123255.1 hypothetical protein -
IUD23_RS02010 (IUD23_02010) 463731..463943 + 213 WP_040123254.1 hypothetical protein -
IUD23_RS02015 (IUD23_02015) 464034..464432 + 399 WP_020853032.1 hypothetical protein -
IUD23_RS02020 (IUD23_02020) 464383..465933 + 1551 WP_038230550.1 phage terminase large subunit -
IUD23_RS02025 (IUD23_02025) 465930..466175 + 246 WP_014607757.1 hypothetical protein -
IUD23_RS02030 (IUD23_02030) 466402..467424 + 1023 WP_230577605.1 hypothetical protein ; Integrase Integrase
IUD23_RS12170 467479..467610 + 132 WP_267959508.1 hypothetical protein -
IUD23_RS02035 (IUD23_02035) 467744..468904 + 1161 WP_234056376.1 DUF1073 domain-containing protein -
IUD23_RS02040 (IUD23_02040) 468953..469234 - 282 WP_004090283.1 helix-turn-helix domain-containing protein -
IUD23_RS02045 (IUD23_02045) 469231..469569 - 339 WP_038230273.1 type II toxin-antitoxin system RelE/ParE family toxin -
IUD23_RS02050 (IUD23_02050) 469642..470487 + 846 WP_040123253.1 phage head morphogenesis protein -
IUD23_RS02055 (IUD23_02055) 470487..471695 + 1209 WP_038230281.1 DUF2213 domain-containing protein -
IUD23_RS02060 (IUD23_02060) 471705..472187 + 483 WP_038230283.1 hypothetical protein -
IUD23_RS02065 (IUD23_02065) 472197..473180 + 984 WP_038230284.1 DUF2184 domain-containing protein -
IUD23_RS02070 (IUD23_02070) 473245..473580 + 336 WP_038230286.1 hypothetical protein -
IUD23_RS02075 (IUD23_02075) 473583..473954 + 372 WP_004085010.1 DUF4054 domain-containing protein -
IUD23_RS02080 (IUD23_02080) 473951..474430 + 480 WP_027700647.1 hypothetical protein -
IUD23_RS02085 (IUD23_02085) 474417..474785 + 369 WP_021358622.1 hypothetical protein -
IUD23_RS02090 (IUD23_02090) 474838..475242 + 405 WP_230577601.1 hypothetical protein -
IUD23_RS02095 (IUD23_02095) 475243..476738 + 1496 Protein_397 DUF3383 domain-containing protein -
IUD23_RS02100 (IUD23_02100) 476748..477185 + 438 WP_038230291.1 DUF3277 family protein -
IUD23_RS02105 (IUD23_02105) 477182..477604 + 423 WP_004085005.1 putative phage tail assembly chaperone -
IUD23_RS02110 (IUD23_02110) 477752..479641 + 1890 WP_038230294.1 hypothetical protein -
IUD23_RS02115 (IUD23_02115) 479715..480023 - 309 WP_004085003.1 putative addiction module antidote protein Antitoxin Detail
IUD23_RS02120 (IUD23_02120) 480027..480326 - 300 WP_024749166.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin Detail
IUD23_RS02125 (IUD23_02125) 480414..480719 + 306 WP_230577600.1 hypothetical protein -
IUD23_RS02130 (IUD23_02130) 480735..481184 + 450 WP_230577599.1 hypothetical protein -
IUD23_RS02135 (IUD23_02135) 481184..481501 + 318 WP_012382585.1 hypothetical protein -
IUD23_RS02140 (IUD23_02140) 481498..482328 + 831 WP_234056377.1 hypothetical protein -
IUD23_RS02145 (IUD23_02145) 482325..482966 + 642 WP_040123250.1 Gp138 family membrane-puncturing spike protein -
IUD23_RS02150 (IUD23_02150) 482963..483316 + 354 WP_040123277.1 hypothetical protein -
IUD23_RS02155 (IUD23_02155) 483372..483665 - 294 WP_004085592.1 putative addiction module antidote protein Antitoxin Detail
IUD23_RS02160 (IUD23_02160) 483668..483964 - 297 WP_004085590.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin Detail
IUD23_RS02165 (IUD23_02165) 484067..485212 + 1146 WP_038211620.1 baseplate J/gp47 family protein -
IUD23_RS02170 (IUD23_02170) 485209..485769 + 561 WP_234056378.1 DUF2612 domain-containing protein -
IUD23_RS02175 (IUD23_02175) 485773..486936 + 1164 WP_234056379.1 tail fiber protein -
IUD23_RS02180 (IUD23_02180) 487183..487836 + 654 WP_234056380.1 hypothetical protein -
IUD23_RS02185 (IUD23_02185) 487833..489038 + 1206 WP_038211240.1 XRE family transcriptional regulator -
IUD23_RS02190 (IUD23_02190) 489753..490550 + 798 WP_234056381.1 serine protease -
IUD23_RS02195 (IUD23_02195) 491042..491341 + 300 WP_234056382.1 DNA-binding transcriptional regulator -
IUD23_RS02200 (IUD23_02200) 491605..492507 - 903 WP_230577614.1 hypothetical protein ; Integrase Integrase
IUD23_RS02205 (IUD23_02205) 492552..492875 - 324 WP_051606225.1 helix-turn-helix domain-containing protein -
IUD23_RS02210 (IUD23_02210) 492862..493011 - 150 WP_196242981.1 hypothetical protein -
IUD23_RS02215 (IUD23_02215) 493008..494426 - 1419 WP_234056383.1 DEAD/DEAH box helicase -
IUD23_RS02220 (IUD23_02220) 494511..494957 + 447 WP_234056384.1 hypothetical protein -
IUD23_RS02225 (IUD23_02225) 494959..495237 - 279 WP_234056385.1 VRR-NUC domain-containing protein -
IUD23_RS02230 (IUD23_02230) 495234..497414 - 2181 WP_234056386.1 DNA polymerase -
IUD23_RS02235 (IUD23_02235) 497416..498573 - 1158 WP_234056261.1 BRO family protein -
IUD23_RS02240 (IUD23_02240) 498699..499265 - 567 WP_234056387.1 DUF2815 family protein -
IUD23_RS02245 (IUD23_02245) 499262..500542 - 1281 WP_234056388.1 DUF2800 domain-containing protein -
IUD23_RS02250 (IUD23_02250) 500539..500970 - 432 WP_234056258.1 hypothetical protein -
IUD23_RS02255 (IUD23_02255) 501027..501221 - 195 WP_016024078.1 hypothetical protein -
IUD23_RS02260 (IUD23_02260) 501253..501444 - 192 WP_040123260.1 hypothetical protein -
IUD23_RS02265 (IUD23_02265) 501468..501659 - 192 WP_004087232.1 hypothetical protein -
IUD23_RS02270 (IUD23_02270) 501656..502063 - 408 WP_038230230.1 hypothetical protein -
IUD23_RS02275 (IUD23_02275) 502060..502530 - 471 WP_038230232.1 DUF1566 domain-containing protein -
IUD23_RS02280 (IUD23_02280) 502527..502952 - 426 WP_038230234.1 hypothetical protein -
IUD23_RS02285 (IUD23_02285) 502949..503404 - 456 WP_038230236.1 hypothetical protein -
IUD23_RS02290 (IUD23_02290) 503784..503972 + 189 WP_004087046.1 antitoxin VbhA family protein Antitoxin Detail
IUD23_RS02295 (IUD23_02295) 503969..504472 + 504 WP_230577608.1 Fic/DOC family protein Toxin Detail
IUD23_RS02300 (IUD23_02300) 504631..505305 - 675 WP_038230238.1 helix-turn-helix transcriptional regulator -
IUD23_RS12175 505511..505636 + 126 WP_267959509.1 hypothetical protein -
IUD23_RS02305 (IUD23_02305) 505626..506123 + 498 WP_234056389.1 hypothetical protein -
IUD23_RS02310 (IUD23_02310) 506184..506372 + 189 WP_038230241.1 hypothetical protein -
IUD23_RS02315 (IUD23_02315) 506402..506617 + 216 WP_230577607.1 hypothetical protein -
IUD23_RS02320 (IUD23_02320) 506635..506856 + 222 WP_234056390.1 hypothetical protein -
IUD23_RS02325 (IUD23_02325) 506901..507482 + 582 WP_038230245.1 Bro-N domain-containing protein -
IUD23_RS02330 (IUD23_02330) 507548..508657 + 1110 WP_040123376.1 Bro-N domain-containing protein -
IUD23_RS02335 (IUD23_02335) 508654..508914 + 261 WP_230577606.1 hypothetical protein -
IUD23_RS02340 (IUD23_02340) 508916..509764 + 849 WP_040123257.1 hypothetical protein -
IUD23_RS02345 (IUD23_02345) 509761..511221 + 1461 WP_038230254.1 replicative DNA helicase -
IUD23_RS02350 (IUD23_02350) 511227..511637 + 411 WP_038228391.1 hypothetical protein -
IUD23_RS02355 (IUD23_02355) 511766..512464 + 699 WP_234056391.1 hypothetical protein -
IUD23_RS02360 (IUD23_02360) 512653..512919 + 267 WP_004089577.1 BrnT family toxin -
IUD23_RS02365 (IUD23_02365) 512906..513244 + 339 WP_004089578.1 BrnA antitoxin family protein -
IUD23_RS02370 (IUD23_02370) 513447..513947 + 501 WP_038230262.1 lysozyme -
IUD23_RS02375 (IUD23_02375) 513940..514269 + 330 WP_173391721.1 phage holin family protein -
IUD23_RS02380 (IUD23_02380) 514259..514720 + 462 WP_040123255.1 hypothetical protein -
IUD23_RS02385 (IUD23_02385) 514722..514934 + 213 WP_040123254.1 hypothetical protein -
IUD23_RS02390 (IUD23_02390) 515025..515423 + 399 WP_020853032.1 hypothetical protein -
IUD23_RS02395 (IUD23_02395) 515374..516924 + 1551 WP_038230550.1 phage terminase large subunit -
IUD23_RS02400 (IUD23_02400) 516921..517166 + 246 WP_014607757.1 hypothetical protein -
IUD23_RS02405 (IUD23_02405) 517393..518415 + 1023 WP_230577605.1 hypothetical protein ; Integrase Integrase
IUD23_RS12180 518470..518601 + 132 WP_267959508.1 hypothetical protein -
IUD23_RS02410 (IUD23_02410) 518735..519895 + 1161 WP_234056376.1 DUF1073 domain-containing protein -
IUD23_RS02415 (IUD23_02415) 519944..520225 - 282 WP_004090283.1 helix-turn-helix domain-containing protein -
IUD23_RS02420 (IUD23_02420) 520222..520560 - 339 WP_038230273.1 type II toxin-antitoxin system RelE/ParE family toxin -
IUD23_RS02425 (IUD23_02425) 520633..521478 + 846 WP_040123253.1 phage head morphogenesis protein -
IUD23_RS02430 (IUD23_02430) 521478..522686 + 1209 WP_038230281.1 DUF2213 domain-containing protein -
IUD23_RS02435 (IUD23_02435) 522696..523178 + 483 WP_038230283.1 hypothetical protein -
IUD23_RS02440 (IUD23_02440) 523188..524171 + 984 WP_038230284.1 DUF2184 domain-containing protein -
IUD23_RS02445 (IUD23_02445) 524236..524571 + 336 WP_038230286.1 hypothetical protein -
IUD23_RS02450 (IUD23_02450) 524574..524945 + 372 WP_004085010.1 DUF4054 domain-containing protein -
IUD23_RS02455 (IUD23_02455) 524942..525421 + 480 WP_027700647.1 hypothetical protein -
IUD23_RS02460 (IUD23_02460) 525408..525776 + 369 WP_021358622.1 hypothetical protein -
IUD23_RS02465 (IUD23_02465) 525829..526233 + 405 WP_230577601.1 hypothetical protein -
IUD23_RS02470 (IUD23_02470) 526234..527730 + 1497 WP_038230289.1 DUF3383 domain-containing protein -
IUD23_RS02475 (IUD23_02475) 527740..528177 + 438 WP_038230291.1 DUF3277 family protein -
IUD23_RS02480 (IUD23_02480) 528174..528596 + 423 WP_004085005.1 putative phage tail assembly chaperone -
IUD23_RS02485 (IUD23_02485) 528744..530633 + 1890 WP_038230294.1 hypothetical protein -
IUD23_RS02490 (IUD23_02490) 530707..531015 - 309 WP_004085003.1 putative addiction module antidote protein Antitoxin Detail
IUD23_RS02495 (IUD23_02495) 531019..531318 - 300 WP_024749166.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin Detail
IUD23_RS02500 (IUD23_02500) 531406..531711 + 306 WP_230577600.1 hypothetical protein -
IUD23_RS02505 (IUD23_02505) 531727..532176 + 450 WP_230577599.1 hypothetical protein -
IUD23_RS02510 (IUD23_02510) 532176..532493 + 318 WP_012382585.1 hypothetical protein -
IUD23_RS02515 (IUD23_02515) 532490..533320 + 831 WP_234056377.1 hypothetical protein -
IUD23_RS02520 (IUD23_02520) 533317..533958 + 642 WP_040123250.1 Gp138 family membrane-puncturing spike protein -
IUD23_RS02525 (IUD23_02525) 533955..534308 + 354 WP_234056392.1 hypothetical protein -
IUD23_RS02530 (IUD23_02530) 534319..534624 - 306 WP_038211623.1 putative addiction module antidote protein Antitoxin Detail
IUD23_RS02535 (IUD23_02535) 534628..534924 - 297 WP_004089252.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin Detail
IUD23_RS02540 (IUD23_02540) 535023..536168 + 1146 WP_038211620.1 baseplate J/gp47 family protein -
IUD23_RS02545 (IUD23_02545) 536165..536725 + 561 WP_011097869.1 DUF2612 domain-containing protein -
IUD23_RS02550 (IUD23_02550) 536729..537892 + 1164 WP_040123248.1 tail fiber protein -
IUD23_RS02555 (IUD23_02555) 538189..538341 + 153 WP_162531331.1 hypothetical protein -
IUD23_RS02560 (IUD23_02560) 539549..540022 - 474 WP_004089938.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance