Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | PumAB/COG3657-dnstrm_HI1420 |
| Location | 483372..483964 | Replicon | chromosome |
| Accession | NZ_CP090316 | ||
| Organism | Xylella fastidiosa subsp. morus strain Riv16 | ||
Toxin (Protein)
| Gene name | PumA | Uniprot ID | A0A060HCK8 |
| Locus tag | IUD23_RS02160 | Protein ID | WP_004085590.1 |
| Coordinates | 483668..483964 (-) | Length | 99 a.a. |
Antitoxin (Protein)
| Gene name | PumB | Uniprot ID | - |
| Locus tag | IUD23_RS02155 | Protein ID | WP_004085592.1 |
| Coordinates | 483372..483665 (-) | Length | 98 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUD23_RS02115 (IUD23_02115) | 479715..480023 | - | 309 | WP_004085003.1 | putative addiction module antidote protein | - |
| IUD23_RS02120 (IUD23_02120) | 480027..480326 | - | 300 | WP_024749166.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| IUD23_RS02125 (IUD23_02125) | 480414..480719 | + | 306 | WP_230577600.1 | hypothetical protein | - |
| IUD23_RS02130 (IUD23_02130) | 480735..481184 | + | 450 | WP_230577599.1 | hypothetical protein | - |
| IUD23_RS02135 (IUD23_02135) | 481184..481501 | + | 318 | WP_012382585.1 | hypothetical protein | - |
| IUD23_RS02140 (IUD23_02140) | 481498..482328 | + | 831 | WP_234056377.1 | hypothetical protein | - |
| IUD23_RS02145 (IUD23_02145) | 482325..482966 | + | 642 | WP_040123250.1 | Gp138 family membrane-puncturing spike protein | - |
| IUD23_RS02150 (IUD23_02150) | 482963..483316 | + | 354 | WP_040123277.1 | hypothetical protein | - |
| IUD23_RS02155 (IUD23_02155) | 483372..483665 | - | 294 | WP_004085592.1 | putative addiction module antidote protein | Antitoxin |
| IUD23_RS02160 (IUD23_02160) | 483668..483964 | - | 297 | WP_004085590.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| IUD23_RS02165 (IUD23_02165) | 484067..485212 | + | 1146 | WP_038211620.1 | baseplate J/gp47 family protein | - |
| IUD23_RS02170 (IUD23_02170) | 485209..485769 | + | 561 | WP_234056378.1 | DUF2612 domain-containing protein | - |
| IUD23_RS02175 (IUD23_02175) | 485773..486936 | + | 1164 | WP_234056379.1 | tail fiber protein | - |
| IUD23_RS02180 (IUD23_02180) | 487183..487836 | + | 654 | WP_234056380.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 422869..537892 | 115023 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 99 a.a. Molecular weight: 11169.70 Da Isoelectric Point: 10.0610
>T230423 WP_004085590.1 NZ_CP090316:c483964-483668 [Xylella fastidiosa subsp. morus]
MIELKQTDTFRKWREKLKDARARSAIASRLDRLAFGHVGDAEPVGKGVSELRINYGPGYRVYFQRRGDTIYLLLCGGDKG
SQARDIKTALHLSEQWSE
MIELKQTDTFRKWREKLKDARARSAIASRLDRLAFGHVGDAEPVGKGVSELRINYGPGYRVYFQRRGDTIYLLLCGGDKG
SQARDIKTALHLSEQWSE
Download Length: 297 bp
>T230423 NZ_CP124894:1831011-1831355 [Enterococcus faecalis]
ATGAAAAGTATCAAAGAGTTGGTGGAAGAATATGAAGTAGAGTTAGTTTTCGCTCCAATAAATAAGCGCGCATGTTACGA
GCCAGTCAAAAGAATAATTTTCGTAAATCAAAATTTATCTATCGAAGAACAAGAAGAGTCTATATTCCATGAGTTCAAAC
ATGTTGTCTCCCATTCGGATTATATTGAGTTATATAAAATTCCTTCTTTTAGAAATAAGATGGAAGCTGAGGCAGATTAT
CATATGTTTAAATGTCTTATTGAAAAACATGACGGGCAATTTAATTATTCTAATGTGATTACTCATTACAATTTAAAGAT
GGGACAGGAAACTTATTTAAATTAA
ATGAAAAGTATCAAAGAGTTGGTGGAAGAATATGAAGTAGAGTTAGTTTTCGCTCCAATAAATAAGCGCGCATGTTACGA
GCCAGTCAAAAGAATAATTTTCGTAAATCAAAATTTATCTATCGAAGAACAAGAAGAGTCTATATTCCATGAGTTCAAAC
ATGTTGTCTCCCATTCGGATTATATTGAGTTATATAAAATTCCTTCTTTTAGAAATAAGATGGAAGCTGAGGCAGATTAT
CATATGTTTAAATGTCTTATTGAAAAACATGACGGGCAATTTAATTATTCTAATGTGATTACTCATTACAATTTAAAGAT
GGGACAGGAAACTTATTTAAATTAA
Antitoxin
Download Length: 98 a.a. Molecular weight: 10246.59 Da Isoelectric Point: 5.6232
>AT230423 WP_004085592.1 NZ_CP090316:c483665-483372 [Xylella fastidiosa subsp. morus]
MTEKLTSYDPAEDLTTDQAIADFMAAAFGTNDPAYVAHALGVVARAKGMTQIASQTGLSREQLYRSFSAEGNPTLRTTLA
VMKALGIELSAKPSGVH
MTEKLTSYDPAEDLTTDQAIADFMAAAFGTNDPAYVAHALGVVARAKGMTQIASQTGLSREQLYRSFSAEGNPTLRTTLA
VMKALGIELSAKPSGVH
Download Length: 294 bp
>AT230423 NZ_CP124894:1830662-1830994 [Enterococcus faecalis]
ATGAACCTCTTGGAACGTATAAAAAAACTAGCAAAAGATAGAGATGTGTCTATTTATCAGCTTGAAGAAGAAATAAATAT
TGGACGAAATACTATTTATCAATGGAATAAGCGAACACCTTCTTCGGATAAACTTGAAGCTGTAGCCAATTATTTTAATG
TTTCTGTTGATTATTTATTAGGTCGTACTGAAAATCCAAACCAAGCTGGTGCTAAACCATCTGATGATTTAGATGAAGTA
TTAGACAATGTGATGAGTTTCGATGGTGAGCCTTTGGATGATCATGATCGGGAAGTTATTCGTGCTTATTTGAAAGGGAG
ATTCGGAAAATAA
ATGAACCTCTTGGAACGTATAAAAAAACTAGCAAAAGATAGAGATGTGTCTATTTATCAGCTTGAAGAAGAAATAAATAT
TGGACGAAATACTATTTATCAATGGAATAAGCGAACACCTTCTTCGGATAAACTTGAAGCTGTAGCCAATTATTTTAATG
TTTCTGTTGATTATTTATTAGGTCGTACTGAAAATCCAAACCAAGCTGGTGCTAAACCATCTGATGATTTAGATGAAGTA
TTAGACAATGTGATGAGTTTCGATGGTGAGCCTTTGGATGATCATGATCGGGAAGTTATTCGTGCTTATTTGAAAGGGAG
ATTCGGAAAATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|