MGE detailed information
MGE type: Prophage MGE length: 33462 bp
Accession: NZ_CP083410 Location: 1630999..1664460 Organism: Escherichia coli strain RP437 Replicon: chromosome
Accession: NZ_CP083410 Location: 1630999..1664460 Organism: Escherichia coli strain RP437 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LAJ62_RS07945 (1627514) | 1627514..1628260 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| LAJ62_RS07950 (1628349) | 1628349..1629035 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| LAJ62_RS07955 (1629212) | 1629212..1629415 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| LAJ62_RS07960 (1629450) | 1629450..1630910 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| LAJ62_RS07965 (1630999) | 1630999..1632366 | - | 1368 | Protein_1558 | MHS family MFS transporter | - |
| LAJ62_RS07970 (1632887) | 1632887..1633000 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| LAJ62_RS07975 (1633069) | 1633069..1633302 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| LAJ62_RS07980 (1633619) | 1633619..1634209 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| LAJ62_RS07985 (1634307) | 1634307..1634882 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| LAJ62_RS07990 (1634882) | 1634882..1635844 | - | 963 | WP_001027733.1 | phage tail protein | - |
| LAJ62_RS07995 (1635795) | 1635795..1636364 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| LAJ62_RS08000 (1636753) | 1636753..1636986 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| LAJ62_RS08005 (1637044) | 1637044..1637454 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| LAJ62_RS08010 (1637606) | 1637606..1637779 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| LAJ62_RS08015 (1637951) | 1637951..1638106 | - | 156 | WP_001309517.1 | protein YnfN | - |
| LAJ62_RS08020 (1638185) | 1638185..1638250 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| LAJ62_RS08025 (1638253) | 1638253..1638441 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| LAJ62_RS08030 (1638452) | 1638452..1638664 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| LAJ62_RS08035 (1639027) | 1639027..1639524 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| LAJ62_RS08040 (1639521) | 1639521..1640054 | - | 534 | WP_001092971.1 | lysozyme | - |
| LAJ62_RS08045 (1640051) | 1640051..1640362 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| LAJ62_RS08050 (1640367) | 1640367..1640582 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| LAJ62_RS08055 (1640802) | 1640802..1640972 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| LAJ62_RS08060 (1641336) | 1641336..1641551 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| LAJ62_RS08065 (1641852) | 1641852..1642064 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| LAJ62_RS08070 (1642119) | 1642119..1642208 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| LAJ62_RS08075 (1642486) | 1642486..1643238 | - | 753 | WP_001047135.1 | antitermination protein | - |
| LAJ62_RS08080 (1643252) | 1643252..1644301 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| LAJ62_RS08085 (1644303) | 1644303..1644581 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| LAJ62_RS08090 (1644648) | 1644648..1644899 | - | 252 | WP_000980994.1 | protein Rem | - |
| LAJ62_RS08095 (1645116) | 1645116..1645271 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| LAJ62_RS08100 (1645343) | 1645343..1645630 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| LAJ62_RS08105 (1645630) | 1645630..1645869 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| LAJ62_RS08110 (1645894) | 1645894..1646199 | + | 306 | WP_001326990.1 | protein YdfV | - |
| LAJ62_RS08115 (1646402) | 1646402..1646734 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| LAJ62_RS08120 (1647171) | 1647171..1647320 | - | 150 | WP_011443592.1 | protein YdfW | - |
| LAJ62_RS08125 (1647355) | 1647355..1647633 | - | 279 | Protein_1590 | hypothetical protein | - |
| LAJ62_RS08130 (1647617) | 1647617..1647847 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| LAJ62_RS08135 (1647931) | 1647931..1648338 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| LAJ62_RS08140 (1648505) | 1648505..1648660 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| LAJ62_RS22530 (1648662) | 1648662..1648790 | + | 129 | WP_000344964.1 | protein YdfB | - |
| LAJ62_RS08145 (1648820) | 1648820..1649038 | + | 219 | WP_001171942.1 | protein YdfC | - |
| LAJ62_RS08150 (1649606) | 1649606..1649794 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| LAJ62_RS08155 (1649791) | 1649791..1649982 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| LAJ62_RS08160 (1650075) | 1650075..1650842 | + | 768 | Protein_1598 | exonuclease | - |
| LAJ62_RS08165 (1650839) | 1650839..1651534 | + | 696 | Protein_1599 | IS3 family transposase IS2 | Transposase |
| LAJ62_RS08170 (1651548) | 1651548..1652705 | + | 1158 | Protein_1600 | Putative defective protein IntQ ; Integrase | Integrase |
| LAJ62_RS08175 (1652893) | 1652893..1653912 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| LAJ62_RS08180 (1653924) | 1653924..1655138 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| LAJ62_RS08185 (1655344) | 1655344..1655670 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| LAJ62_RS08190 (1655805) | 1655805..1656146 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| LAJ62_RS08195 (1656181) | 1656181..1656741 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| LAJ62_RS08200 (1656744) | 1656744..1657454 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| LAJ62_RS08205 (1657562) | 1657562..1657867 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| LAJ62_RS08210 (1658066) | 1658066..1660492 | + | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| LAJ62_RS08215 (1660553) | 1660553..1662976 | + | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| LAJ62_RS08220 (1662987) | 1662987..1663604 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| LAJ62_RS08225 (1663606) | 1663606..1664460 | + | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| LAJ62_RS08230 (1664503) | 1664503..1665117 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| LAJ62_RS08235 (1665276) | 1665276..1666568 | + | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| LAJ62_RS08240 (1666521) | 1666521..1667216 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| LAJ62_RS08245 (1667341) | 1667341..1668561 | - | 1221 | Protein_1615 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0 |