MGE detailed information
MGE type: Prophage MGE length: 33462 bp
Accession: NZ_CP079991 Location: 2485629..2519090 Organism: Escherichia coli strain KMS2005 Replicon: chromosome
Accession: NZ_CP079991 Location: 2485629..2519090 Organism: Escherichia coli strain KMS2005 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KYK86_RS11995 (2482144) | 2482144..2482890 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| KYK86_RS12000 (2482979) | 2482979..2483665 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| KYK86_RS12005 (2483842) | 2483842..2484045 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| KYK86_RS12010 (2484080) | 2484080..2485540 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| KYK86_RS12015 (2485629) | 2485629..2486996 | - | 1368 | Protein_2360 | MHS family MFS transporter | - |
| KYK86_RS12020 (2487517) | 2487517..2487630 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| KYK86_RS12025 (2487699) | 2487699..2487932 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| KYK86_RS12030 (2488249) | 2488249..2488839 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| KYK86_RS12035 (2488937) | 2488937..2489512 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| KYK86_RS12040 (2489512) | 2489512..2490474 | - | 963 | WP_001027733.1 | phage tail protein | - |
| KYK86_RS12045 (2490425) | 2490425..2490994 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| KYK86_RS12050 (2491383) | 2491383..2491616 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| KYK86_RS12055 (2491674) | 2491674..2492084 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| KYK86_RS12060 (2492236) | 2492236..2492409 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| KYK86_RS12070 (2492815) | 2492815..2492880 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| KYK86_RS12075 (2492883) | 2492883..2493071 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| KYK86_RS12080 (2493082) | 2493082..2493294 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| KYK86_RS12085 (2493657) | 2493657..2494154 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| KYK86_RS12090 (2494151) | 2494151..2494684 | - | 534 | WP_001092971.1 | lysozyme | - |
| KYK86_RS12095 (2494681) | 2494681..2494992 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| KYK86_RS12100 (2494997) | 2494997..2495212 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| KYK86_RS12105 (2495432) | 2495432..2495602 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| KYK86_RS12110 (2495966) | 2495966..2496181 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| KYK86_RS12115 (2496482) | 2496482..2496694 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| KYK86_RS12120 (2496749) | 2496749..2496838 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| KYK86_RS12125 (2497116) | 2497116..2497868 | - | 753 | WP_001047135.1 | antitermination protein | - |
| KYK86_RS12130 (2497882) | 2497882..2498931 | - | 1050 | WP_001393597.1 | DUF968 domain-containing protein | - |
| KYK86_RS12135 (2498933) | 2498933..2499211 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| KYK86_RS12140 (2499278) | 2499278..2499529 | - | 252 | WP_000980994.1 | protein Rem | - |
| KYK86_RS12145 (2499746) | 2499746..2499901 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| KYK86_RS12150 (2499973) | 2499973..2500260 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| KYK86_RS12155 (2500260) | 2500260..2500499 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| KYK86_RS12160 (2500524) | 2500524..2500829 | + | 306 | WP_001326990.1 | protein YdfV | - |
| KYK86_RS12165 (2501032) | 2501032..2501364 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| KYK86_RS12170 (2501801) | 2501801..2501950 | - | 150 | WP_011443592.1 | protein YdfW | - |
| KYK86_RS12175 (2501985) | 2501985..2502263 | - | 279 | Protein_2391 | protein YdfX | - |
| KYK86_RS12180 (2502247) | 2502247..2502477 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| KYK86_RS12185 (2502561) | 2502561..2502968 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| KYK86_RS12190 (2503135) | 2503135..2503290 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| KYK86_RS22955 (2503292) | 2503292..2503420 | + | 129 | WP_000344964.1 | protein YdfB | - |
| KYK86_RS12195 (2503450) | 2503450..2503668 | + | 219 | WP_001171942.1 | protein YdfC | - |
| KYK86_RS12200 (2504236) | 2504236..2504424 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| KYK86_RS12205 (2504421) | 2504421..2504612 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| KYK86_RS12210 (2504705) | 2504705..2505472 | + | 768 | Protein_2399 | exonuclease | - |
| KYK86_RS12215 (2505469) | 2505469..2506164 | + | 696 | Protein_2400 | IS3 family transposase IS2 | Transposase |
| KYK86_RS12220 (2506178) | 2506178..2507335 | + | 1158 | Protein_2401 | Putative defective protein IntQ ; Integrase | Integrase |
| KYK86_RS12225 (2507523) | 2507523..2508542 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| KYK86_RS12230 (2508554) | 2508554..2509768 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| KYK86_RS12235 (2509974) | 2509974..2510300 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| KYK86_RS12240 (2510435) | 2510435..2510776 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| KYK86_RS12245 (2510811) | 2510811..2511371 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| KYK86_RS12250 (2511374) | 2511374..2512084 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| KYK86_RS12255 (2512192) | 2512192..2512497 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| KYK86_RS12260 (2512696) | 2512696..2515122 | + | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| KYK86_RS12265 (2515183) | 2515183..2517606 | + | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| KYK86_RS12270 (2517617) | 2517617..2518234 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| KYK86_RS12275 (2518236) | 2518236..2519090 | + | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| KYK86_RS12280 (2519133) | 2519133..2519747 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| KYK86_RS12285 (2519906) | 2519906..2521198 | + | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| KYK86_RS12290 (2521151) | 2521151..2521846 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| KYK86_RS12295 (2521971) | 2521971..2523191 | - | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0 |