MGE detailed information
MGE type: Prophage MGE length: 32265 bp
Accession: NZ_CP079767 Location: 1067917..1100181 Organism: Escherichia coli strain SF10 Replicon: chromosome
Accession: NZ_CP079767 Location: 1067917..1100181 Organism: Escherichia coli strain SF10 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KX927_RS07530 (1063816) | 1063816..1065036 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| KX927_RS07535 (1065161) | 1065161..1065856 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| KX927_RS07540 (1065809) | 1065809..1067101 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| KX927_RS07545 (1067260) | 1067260..1067874 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| KX927_RS07550 (1067917) | 1067917..1068771 | - | 855 | WP_259554278.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| KX927_RS07555 (1068773) | 1068773..1069390 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| KX927_RS07560 (1069401) | 1069401..1071824 | - | 2424 | WP_259555280.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| KX927_RS07565 (1071885) | 1071885..1074311 | - | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| KX927_RS07570 (1074510) | 1074510..1074815 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| KX927_RS07575 (1074923) | 1074923..1075633 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| KX927_RS07580 (1075636) | 1075636..1076196 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| KX927_RS07585 (1076231) | 1076231..1076572 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| KX927_RS07590 (1076707) | 1076707..1077033 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| KX927_RS07595 (1077239) | 1077239..1078453 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| KX927_RS07600 (1078465) | 1078465..1079484 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| KX927_RS07605 (1079540) | 1079540..1079749 | - | 210 | WP_032306542.1 | protein YdfC | - |
| KX927_RS07610 (1079779) | 1079779..1079907 | - | 129 | WP_000344964.1 | protein YdfB | - |
| KX927_RS07615 (1079909) | 1079909..1080064 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| KX927_RS07620 (1080231) | 1080231..1080638 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| KX927_RS07625 (1080722) | 1080722..1080952 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| KX927_RS07630 (1080936) | 1080936..1081127 | + | 192 | Protein_1083 | protein YdfX | - |
| KX927_RS07635 (1081104) | 1081104..1081226 | + | 123 | Protein_1084 | hypothetical protein | - |
| KX927_RS07640 (1081226) | 1081226..1081575 | + | 350 | Protein_1085 | hypothetical protein | - |
| KX927_RS07645 (1082220) | 1082220..1083242 | + | 1023 | Protein_1086 | ISNCY family transposase ISCARN112 | Transposase |
| KX927_RS07650 (1083363) | 1083363..1083512 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| KX927_RS07655 (1083949) | 1083949..1084281 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| KX927_RS07660 (1084484) | 1084484..1084789 | - | 306 | WP_001326990.1 | protein YdfV | - |
| KX927_RS07665 (1084814) | 1084814..1085053 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| KX927_RS07670 (1085053) | 1085053..1085340 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| KX927_RS07675 (1085412) | 1085412..1085567 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| KX927_RS07680 (1085737) | 1085737..1086411 | + | 675 | Protein_1093 | DUF968 domain-containing protein | - |
| KX927_RS07685 (1086425) | 1086425..1087177 | + | 753 | WP_001047135.1 | antitermination protein | - |
| KX927_RS07690 (1087455) | 1087455..1087544 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| KX927_RS07695 (1087599) | 1087599..1087811 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| KX927_RS07700 (1088112) | 1088112..1088327 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| KX927_RS07705 (1088691) | 1088691..1088861 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| KX927_RS07710 (1089081) | 1089081..1089296 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| KX927_RS07715 (1089301) | 1089301..1089612 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| KX927_RS07720 (1089609) | 1089609..1090142 | + | 534 | WP_001092971.1 | lysozyme | - |
| KX927_RS07725 (1090139) | 1090139..1090636 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| KX927_RS07735 (1091776) | 1091776..1091988 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| KX927_RS07740 (1091999) | 1091999..1092187 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| KX927_RS07745 (1092190) | 1092190..1092255 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| KX927_RS07750 (1092334) | 1092334..1092489 | + | 156 | WP_001309517.1 | protein YnfN | - |
| KX927_RS07755 (1092661) | 1092661..1092834 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| KX927_RS07760 (1092986) | 1092986..1093396 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| KX927_RS07765 (1093454) | 1093454..1093687 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| KX927_RS07770 (1094076) | 1094076..1094621 | + | 546 | WP_000453611.1 | DNA-packaging protein | - |
| KX927_RS07775 (1094596) | 1094596..1095741 | + | 1146 | Protein_1112 | phage terminase large subunit family protein | - |
| KX927_RS07780 (1095741) | 1095741..1096175 | + | 435 | Protein_1113 | S49 family peptidase | - |
| KX927_RS07785 (1096298) | 1096298..1096873 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| KX927_RS07790 (1096971) | 1096971..1097561 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| KX927_RS07795 (1097878) | 1097878..1098111 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| KX927_RS07800 (1098180) | 1098180..1098293 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| KX927_RS07805 (1098814) | 1098814..1100181 | + | 1368 | Protein_1118 | MHS family MFS transporter | - |
| KX927_RS07810 (1100270) | 1100270..1101730 | + | 1461 | WP_000527809.1 | mannitol dehydrogenase family protein | - |
| KX927_RS07815 (1101765) | 1101765..1101968 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| KX927_RS07820 (1102145) | 1102145..1102831 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| KX927_RS07825 (1102920) | 1102920..1103666 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.009 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.009 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.009 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.009 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.009 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.009 |