MGE detailed information
MGE type: Prophage MGE length: 33462 bp
Accession: NZ_CP077969 Location: 1549815..1583276 Organism: Escherichia coli strain JM83 Replicon: chromosome
Accession: NZ_CP077969 Location: 1549815..1583276 Organism: Escherichia coli strain JM83 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KTJ86_RS07500 (1546330) | 1546330..1547076 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| KTJ86_RS07505 (1547165) | 1547165..1547851 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| KTJ86_RS07510 (1548028) | 1548028..1548231 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| KTJ86_RS07515 (1548266) | 1548266..1549726 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| KTJ86_RS07520 (1549815) | 1549815..1551182 | - | 1368 | Protein_1471 | MHS family MFS transporter | - |
| KTJ86_RS07525 (1551703) | 1551703..1551816 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| KTJ86_RS07530 (1551885) | 1551885..1552118 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| KTJ86_RS07535 (1552435) | 1552435..1553025 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| KTJ86_RS07540 (1553123) | 1553123..1553698 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| KTJ86_RS07545 (1553698) | 1553698..1554660 | - | 963 | WP_001027733.1 | phage tail protein | - |
| KTJ86_RS07550 (1554611) | 1554611..1555180 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| KTJ86_RS07555 (1555569) | 1555569..1555802 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| KTJ86_RS07560 (1555860) | 1555860..1556270 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| KTJ86_RS07565 (1556422) | 1556422..1556595 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| KTJ86_RS07570 (1556767) | 1556767..1556922 | - | 156 | WP_001309517.1 | protein YnfN | - |
| KTJ86_RS07575 (1557001) | 1557001..1557066 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| KTJ86_RS07580 (1557069) | 1557069..1557257 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| KTJ86_RS07585 (1557268) | 1557268..1557480 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| KTJ86_RS07590 (1557843) | 1557843..1558340 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| KTJ86_RS07595 (1558337) | 1558337..1558870 | - | 534 | WP_001092971.1 | lysozyme | - |
| KTJ86_RS07600 (1558867) | 1558867..1559178 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| KTJ86_RS07605 (1559183) | 1559183..1559398 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| KTJ86_RS07610 (1559618) | 1559618..1559788 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| KTJ86_RS07615 (1560152) | 1560152..1560367 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| KTJ86_RS07620 (1560668) | 1560668..1560880 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| KTJ86_RS07625 (1560935) | 1560935..1561024 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| KTJ86_RS07630 (1561302) | 1561302..1562054 | - | 753 | WP_001047135.1 | antitermination protein | - |
| KTJ86_RS07635 (1562068) | 1562068..1563117 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| KTJ86_RS07640 (1563119) | 1563119..1563397 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| KTJ86_RS07645 (1563464) | 1563464..1563715 | - | 252 | WP_000980994.1 | protein Rem | - |
| KTJ86_RS07650 (1563932) | 1563932..1564087 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| KTJ86_RS07655 (1564159) | 1564159..1564446 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| KTJ86_RS07660 (1564446) | 1564446..1564685 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| KTJ86_RS07665 (1564710) | 1564710..1565015 | + | 306 | WP_001326990.1 | protein YdfV | - |
| KTJ86_RS07670 (1565218) | 1565218..1565550 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| KTJ86_RS07675 (1565987) | 1565987..1566136 | - | 150 | WP_011443592.1 | protein YdfW | - |
| KTJ86_RS07680 (1566171) | 1566171..1566449 | - | 279 | Protein_1503 | hypothetical protein | - |
| KTJ86_RS07685 (1566433) | 1566433..1566663 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| KTJ86_RS07690 (1566747) | 1566747..1567154 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| KTJ86_RS07695 (1567321) | 1567321..1567476 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| KTJ86_RS22030 (1567478) | 1567478..1567606 | + | 129 | WP_000344964.1 | protein YdfB | - |
| KTJ86_RS07700 (1567636) | 1567636..1567854 | + | 219 | WP_001171942.1 | protein YdfC | - |
| KTJ86_RS07705 (1568422) | 1568422..1568610 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| KTJ86_RS07710 (1568607) | 1568607..1568798 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| KTJ86_RS07715 (1568891) | 1568891..1569658 | + | 768 | Protein_1511 | exonuclease | - |
| KTJ86_RS07720 (1569655) | 1569655..1570350 | + | 696 | Protein_1512 | IS3 family transposase IS2 | Transposase |
| KTJ86_RS07725 (1570364) | 1570364..1571521 | + | 1158 | Protein_1513 | Putative defective protein IntQ ; Integrase | Integrase |
| KTJ86_RS07730 (1571709) | 1571709..1572728 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| KTJ86_RS07735 (1572740) | 1572740..1573954 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| KTJ86_RS07740 (1574160) | 1574160..1574486 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| KTJ86_RS07745 (1574621) | 1574621..1574962 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| KTJ86_RS07750 (1574997) | 1574997..1575557 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| KTJ86_RS07755 (1575560) | 1575560..1576270 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| KTJ86_RS07760 (1576378) | 1576378..1576683 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| KTJ86_RS07765 (1576882) | 1576882..1579308 | + | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| KTJ86_RS07770 (1579369) | 1579369..1581792 | + | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| KTJ86_RS07775 (1581803) | 1581803..1582420 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| KTJ86_RS07780 (1582422) | 1582422..1583276 | + | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| KTJ86_RS07785 (1583319) | 1583319..1583933 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| KTJ86_RS07790 (1584092) | 1584092..1585384 | + | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| KTJ86_RS07795 (1585337) | 1585337..1586032 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| KTJ86_RS07800 (1586157) | 1586157..1587377 | - | 1221 | Protein_1528 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0 |