MGE detailed information
MGE type: Prophage MGE length: 34826 bp
Accession: NZ_CP076470 Location: 4079180..4114005 Organism: Escherichia coli strain DH5a Replicon: chromosome
Accession: NZ_CP076470 Location: 4079180..4114005 Organism: Escherichia coli strain DH5a Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KN807_RS19625 (4075079) | 4075079..4076299 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| KN807_RS19630 (4076424) | 4076424..4077119 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| KN807_RS19635 (4077072) | 4077072..4078364 | - | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| KN807_RS19640 (4078523) | 4078523..4079137 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| KN807_RS19645 (4079180) | 4079180..4080034 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| KN807_RS19650 (4080036) | 4080036..4080653 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| KN807_RS19655 (4080664) | 4080664..4083087 | - | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| KN807_RS19660 (4083148) | 4083148..4085574 | - | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| KN807_RS19665 (4085773) | 4085773..4086078 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| KN807_RS19670 (4086186) | 4086186..4086896 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| KN807_RS19675 (4086899) | 4086899..4087459 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| KN807_RS19680 (4087494) | 4087494..4087835 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| KN807_RS19685 (4087970) | 4087970..4088296 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| KN807_RS19690 (4088502) | 4088502..4089716 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| KN807_RS19695 (4089728) | 4089728..4090747 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| KN807_RS19700 (4090935) | 4090935..4092092 | - | 1158 | Protein_3847 | Putative defective protein IntQ ; Integrase | Integrase |
| KN807_RS19705 (4092094) | 4092094..4093141 | + | 1048 | Protein_3848 | IS3 family transposase IS2 | Transposase |
| KN807_RS19710 (4093152) | 4093152..4093456 | - | 305 | Protein_3849 | DUF3596 domain-containing protein | - |
| KN807_RS19715 (4093470) | 4093470..4094165 | - | 696 | Protein_3850 | IS3 family transposase IS2 | Transposase |
| KN807_RS19720 (4094162) | 4094162..4094929 | - | 768 | Protein_3851 | exonuclease | - |
| KN807_RS19725 (4095022) | 4095022..4095213 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| KN807_RS19730 (4095210) | 4095210..4095398 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| KN807_RS19735 (4095966) | 4095966..4096184 | - | 219 | WP_001171942.1 | protein YdfC | - |
| KN807_RS22310 (4096214) | 4096214..4096342 | - | 129 | WP_000344964.1 | protein YdfB | - |
| KN807_RS19740 (4096344) | 4096344..4096499 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| KN807_RS19745 (4096666) | 4096666..4097073 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| KN807_RS19750 (4097157) | 4097157..4097387 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| KN807_RS19755 (4097371) | 4097371..4097649 | + | 279 | Protein_3859 | protein YdfX | - |
| KN807_RS19760 (4097684) | 4097684..4097833 | + | 150 | WP_011443592.1 | protein YdfW | - |
| KN807_RS19765 (4098270) | 4098270..4098602 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| KN807_RS19770 (4098805) | 4098805..4099110 | - | 306 | WP_001326990.1 | protein YdfV | - |
| KN807_RS19775 (4099135) | 4099135..4099374 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| KN807_RS19780 (4099374) | 4099374..4099661 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| KN807_RS19785 (4099733) | 4099733..4099888 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| KN807_RS19790 (4100105) | 4100105..4100356 | + | 252 | WP_000980994.1 | protein Rem | - |
| KN807_RS19795 (4100423) | 4100423..4100701 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| KN807_RS19800 (4100703) | 4100703..4101752 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| KN807_RS19805 (4101766) | 4101766..4102518 | + | 753 | WP_001047135.1 | antitermination protein | - |
| KN807_RS19810 (4102796) | 4102796..4102885 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| KN807_RS19815 (4102940) | 4102940..4103152 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| KN807_RS19820 (4103453) | 4103453..4103668 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| KN807_RS19825 (4104032) | 4104032..4104202 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| KN807_RS19830 (4104422) | 4104422..4104637 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| KN807_RS19835 (4104642) | 4104642..4104953 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| KN807_RS19840 (4104950) | 4104950..4105483 | + | 534 | WP_001092971.1 | lysozyme | - |
| KN807_RS19845 (4105480) | 4105480..4105977 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| KN807_RS19850 (4106340) | 4106340..4106552 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| KN807_RS19855 (4106563) | 4106563..4106751 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| KN807_RS19860 (4106754) | 4106754..4106819 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| KN807_RS19870 (4107225) | 4107225..4107398 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| KN807_RS19875 (4107550) | 4107550..4107960 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| KN807_RS19880 (4108018) | 4108018..4108251 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| KN807_RS19885 (4108640) | 4108640..4109209 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| KN807_RS19890 (4109160) | 4109160..4110122 | + | 963 | WP_001027733.1 | phage tail protein | - |
| KN807_RS19895 (4110122) | 4110122..4110697 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| KN807_RS19900 (4110795) | 4110795..4111385 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| KN807_RS19905 (4111702) | 4111702..4111935 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| KN807_RS19910 (4112004) | 4112004..4112117 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| KN807_RS19915 (4112638) | 4112638..4114005 | + | 1368 | Protein_3890 | MHS family MFS transporter | - |
| KN807_RS19920 (4114094) | 4114094..4115554 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| KN807_RS19925 (4115589) | 4115589..4115792 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| KN807_RS19930 (4115969) | 4115969..4116655 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| KN807_RS19935 (4116744) | 4116744..4117490 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0 |